Histone_ChIP-seq_ENCSR315IRO
Histone_ChIP-seq ENCSR315IRO [biosample_summary="Homo sapiens HUES6" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR315IRO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR315IRO [biosamplesummary="Homo sapiens HUES6" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN152RNL|/analyses/ENCAN152RNL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF942MCG|/files/ENCFF942MCG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 19523792 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF942MCG|/files/ENCFF942MCG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF942MCG|/files/ENCFF942MCG/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR315IRO | float |
Histone_ChIP-seq_ENCSR315IRO |
Histone_ChIP-seq ENCSR315IRO [biosample_summary="Homo sapiens HUES6" and target="H3K27ac"]
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[1.69, 54] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF234HQO.bed.gz | 1.12 MB | 26e0ece2ed07ceef3685c3785f063354 |
| ENCFF234HQO.bed.gz.dvc | 101.0 B | 36ae8684cf9f46beeaddb985297adbf7 |
| ENCFF234HQO.tabix.bed.gz | 497.44 KB | f6d8ee09b868be7fa4e5c67dd8752389 |
| ENCFF234HQO.tabix.bed.gz.dvc | 106.0 B | 0abb23f878b7c916b05fa6d097ddd2f2 |
| ENCFF234HQO.tabix.bed.gz.tbi | 217.85 KB | 1a81e0c51ab51cdb6b1d5606732c79dd |
| ENCFF234HQO.tabix.bed.gz.tbi.dvc | 110.0 B | 6a8fefa6f810a873abbe20f27bef0b37 |
| genomic_resource.yaml | 3.23 KB | b643e9e30ec736881caea1a432f474e3 |
| genomic_resource_original.yaml | 3.12 KB | 9ad68f92bc9d64a89855b834fd31a5e2 |
| statistics/ |