Resource
| Id | Histone_ChIP-seq/ENCSR314BEX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR314BEX [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K27ac"] |
| Description |
status: archived biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN784WVT|/analyses/ENCAN784WVT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF914QOY|/files/ENCFF914QOY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14104015 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR314BEX | float |
Histone_ChIP-seq_ENCSR314BEX |
Histone_ChIP-seq ENCSR314BEX [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K27ac"]
|
 |
[1.98, 97.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42990125 | 1.34% | 28278 |
| chr1 | 4521950 | 1.82% | 2930 |
| chr1_KI270713v1_random | 393 | 0.96% | 1 |
| chr2 | 3160953 | 1.31% | 2078 |
| chr3 | 2376962 | 1.20% | 1609 |
| chr4 | 1352557 | 0.71% | 885 |
| chr5 | 2091028 | 1.15% | 1288 |
| chr6 | 2574932 | 1.51% | 1671 |
| chr7 | 1810639 | 1.14% | 1236 |
| chr8 | 1364806 | 0.94% | 984 |
| chr9 | 1622836 | 1.17% | 1052 |
| chr10 | 1964752 | 1.47% | 1295 |
| chr11 | 2347297 | 1.74% | 1420 |
| chr12 | 2260043 | 1.70% | 1454 |
| chr13 | 884861 | 0.77% | 568 |
| chr14 | 1789587 | 1.67% | 1087 |
| chr15 | 1360285 | 1.33% | 860 |
| chr16 | 1650692 | 1.83% | 1159 |
| chr17 | 2534672 | 3.04% | 1689 |
| chr17_GL000205v2_random | 1286 | 0.69% | 1 |
| chr18 | 650220 | 0.81% | 424 |
| chr19 | 2487570 | 4.24% | 1724 |
| chr20 | 1139741 | 1.77% | 775 |
| chr21 | 464282 | 0.99% | 327 |
| chr22 | 1107687 | 2.18% | 719 |
| chrUn_GL000219v1 | 2207 | 1.23% | 2 |
| chrX | 1417543 | 0.91% | 999 |
| chrY | 50344 | 0.09% | 41 |
| 3339 contigs with no values (128671551 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28278 | 260 | 26947 | 1520.27 | 1102 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF384FUV.bed.gz | 744.96 KB | 8788e66a7bedc9f4834ff998517fde48 |
| ENCFF384FUV.tabix.bed.gz | 322.24 KB | 273f1eb62d43bc57999518b49da0ac0a |
| ENCFF384FUV.tabix.bed.gz.tbi | 125.86 KB | a5c54598bb3411b8d54dfc7da2454a0d |
| genomic_resource.yaml | 1.96 KB | 2f0a4dc0e552f879754af61c2dd3e021 |
| statistics/ |