Resource
| Id | Histone_ChIP-seq/ENCSR313NJN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR313NJN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3F3A"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN345EJH|/analyses/ENCAN345EJH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF913VTT|/files/ENCFF913VTT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 39223757 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR313NJN | float |
Histone_ChIP-seq_ENCSR313NJN |
Histone_ChIP-seq ENCSR313NJN [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H3F3A"]
|
 |
[1.31, 12.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18917542 | 0.59% | 59812 |
| chr1 | 2091389 | 0.84% | 6600 |
| chr1_KI270713v1_random | 965 | 2.37% | 3 |
| chr1_KI270714v1_random | 135 | 0.32% | 1 |
| chr2 | 983286 | 0.41% | 3221 |
| chr3 | 821215 | 0.41% | 2587 |
| chr4 | 526572 | 0.28% | 1678 |
| chr4_GL000008v2_random | 1218 | 0.58% | 5 |
| chr5 | 829824 | 0.46% | 2656 |
| chr6 | 952912 | 0.56% | 2938 |
| chr7 | 940162 | 0.59% | 2961 |
| chr8 | 597917 | 0.41% | 1949 |
| chr9 | 676313 | 0.49% | 2203 |
| chr9_KI270718v1_random | 241 | 0.63% | 1 |
| chr10 | 678048 | 0.51% | 2214 |
| chr11 | 1046143 | 0.77% | 3248 |
| chr12 | 1174752 | 0.88% | 3632 |
| chr13 | 292369 | 0.26% | 949 |
| chr14 | 550399 | 0.51% | 1788 |
| chr14_GL000225v1_random | 424 | 0.20% | 3 |
| chr14_KI270723v1_random | 392 | 1.03% | 2 |
| chr15 | 533955 | 0.52% | 1781 |
| chr16 | 1009564 | 1.12% | 3182 |
| chr17 | 1477427 | 1.77% | 4596 |
| chr17_GL000205v2_random | 7621 | 4.11% | 27 |
| chr17_KI270729v1_random | 4920 | 1.75% | 17 |
| chr17_KI270730v1_random | 143 | 0.13% | 1 |
| chr18 | 209963 | 0.26% | 719 |
| chr19 | 1740137 | 2.97% | 5342 |
| chr20 | 781847 | 1.21% | 2234 |
| chr21 | 193178 | 0.41% | 638 |
| chr22 | 591479 | 1.16% | 1956 |
| chr22_KI270732v1_random | 166 | 0.40% | 1 |
| chr22_KI270733v1_random | 5623 | 3.13% | 17 |
| chr22_KI270735v1_random | 453 | 1.06% | 3 |
| chr22_KI270736v1_random | 693 | 0.38% | 3 |
| chrUn_GL000195v1 | 1133 | 0.62% | 7 |
| chrUn_GL000214v1 | 224 | 0.16% | 1 |
| chrUn_GL000216v2 | 2140 | 1.21% | 8 |
| chrUn_GL000219v1 | 3013 | 1.68% | 7 |
| chrUn_GL000220v1 | 466 | 0.29% | 3 |
| chrUn_GL000224v1 | 587 | 0.33% | 3 |
| chrUn_KI270333v1 | 132 | 4.89% | 1 |
| chrUn_KI270438v1 | 667 | 0.59% | 3 |
| chrUn_KI270442v1 | 956 | 0.24% | 5 |
| chrUn_KI270589v1 | 115 | 0.26% | 1 |
| chrUn_KI270744v1 | 2441 | 1.45% | 9 |
| chrUn_KI270749v1 | 915 | 0.58% | 1 |
| chrUn_KI270751v1 | 274 | 0.18% | 2 |
| chrUn_KI270754v1 | 171 | 0.43% | 1 |
| chrX | 176281 | 0.11% | 576 |
| chrY | 6182 | 0.01% | 28 |
| 3315 contigs with no values (125384727 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59812 | 115 | 16559 | 316.28 | 250 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF864SBW.bed.gz | 1.08 MB | 088458a437c2d58e16527b0517a0fc7c |
| ENCFF864SBW.tabix.bed.gz | 560.97 KB | f22b84fd33669065ce97013c133e05ee |
| ENCFF864SBW.tabix.bed.gz.tbi | 183.28 KB | 0c3a2bfa796553201d759d1953605ebd |
| genomic_resource.yaml | 1.92 KB | da155da3c594ba6392a259065381783c |
| statistics/ |