Resource

Id Histone_ChIP-seq/ENCSR313GUPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR313GUP [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR313GUP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002038/
  • biosample_summary: Homo sapiens substantia nigra tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:08.206562+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR313GUP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR313GUP float

Histone_ChIP-seq_ENCSR313GUP
Histone_ChIP-seq ENCSR313GUP [biosample_summary="Homo sapiens substantia nigra tissue male adult (81 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR313GUP [2.21, 17.1]
n
25,244,075
mean
5.18
sd
1.38

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 252440750.78% 30094
chr1 2488031 1.00% 2960
chr2 1565733 0.65% 1976
chr3 1350690 0.68% 1618
chr4 657918 0.35% 883
chr5 951668 0.52% 1251
chr6 931148 0.55% 1139
chr7 1044719 0.66% 1305
chr8 630086 0.43% 833
chr9 1239346 0.90% 1459
chr10 896080 0.67% 1122
chr11 1505989 1.11% 1717
chr12 1474908 1.11% 1711
chr13 321357 0.28% 440
chr14 797188 0.74% 950
chr15 806206 0.79% 977
chr16 1532180 1.70% 1713
chr17 1851935 2.22% 2089
chr18 287273 0.36% 375
chr19 2383088 4.07% 2590
chr20 969130 1.50% 1088
chr21 291950 0.63% 358
chr22 964641 1.90% 1091
chrX 291763 0.19% 432
chrY 11048 0.02% 17
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30094 330 9537 838.84 701
global segment-length histogram

Files

Filename Size md5
ENCFF236EMJ.bed.gz 523.98 KB b4d622364d4fac5062527024ba5c84b9
ENCFF236EMJ.tabix.bed.gz 284.28 KB 3b6a759d2c2e3e1dde88dcb93a835d32
ENCFF236EMJ.tabix.bed.gz.tbi 114.63 KB 0f4e886d28e4456913535840d0b45534
genomic_resource.yaml 2.02 KB 6d0df5598244bbddbfd61ab35ed3e69b
statistics/