Histone_ChIP-seq_ENCSR313DUH
Histone_ChIP-seq ENCSR313DUH [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR313DUH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR313DUH [biosamplesummary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN235WTN|/analyses/ENCAN235WTN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF337TYN|/files/ENCFF337TYN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF337TYN|/files/ENCFF337TYN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR313DUH | float |
Histone_ChIP-seq_ENCSR313DUH |
Histone_ChIP-seq ENCSR313DUH [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)" and target="H3K4me1"]
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[1.63, 6.88] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF489WZM.bed.gz | 613.43 KB | 5c4c43c78e37a342bd02ecdf9007a001 |
| ENCFF489WZM.bed.gz.dvc | 100.0 B | 6575a615c3db317b9c5dfd123b7be128 |
| ENCFF489WZM.tabix.bed.gz | 317.1 KB | a6cfde851b1adedf413a4cd82419c8f4 |
| ENCFF489WZM.tabix.bed.gz.dvc | 106.0 B | 96049269a6137f461416b2463f512d02 |
| ENCFF489WZM.tabix.bed.gz.tbi | 148.76 KB | 9f870de94f150e31a9d3f684acba6ae7 |
| ENCFF489WZM.tabix.bed.gz.tbi.dvc | 110.0 B | 4c778fb146d8a79064e0439dfd70e4a8 |
| genomic_resource.yaml | 2.78 KB | e8aff66168f6615fe2486455e345b265 |
| genomic_resource_original.yaml | 2.64 KB | f7ae86232b05e88d31031f56430d1388 |
| statistics/ |