Resource

Id Histone_ChIP-seq/ENCSR312NYScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR312NYS [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR312NYS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0003013/
  • biosample_summary: Homo sapiens placental basal plate tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:59.820388+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR312NYS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR312NYS float

Histone_ChIP-seq_ENCSR312NYS
Histone_ChIP-seq ENCSR312NYS [biosample_summary="Homo sapiens placental basal plate tissue female embryo (40 weeks)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR312NYS [1.76, 58.4]
n
64,434,504
mean
5.8
sd
2.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 644345042.00% 92306
chr1 6225023 2.50% 9069
chr1_KI270711v1_random 949 2.25% 2
chr2 3814579 1.58% 6386
chr3 3386956 1.71% 5307
chr4 1835027 0.96% 2901
chr5 2682614 1.48% 4286
chr6 2285338 1.34% 3726
chr7 3099359 1.95% 4460
chr8 1769127 1.22% 2897
chr9 2988833 2.16% 4163
chr10 2542473 1.90% 4150
chr11 3745063 2.77% 5062
chr12 3528514 2.65% 4809
chr13 830265 0.73% 1523
chr14 2190867 2.05% 3433
chr15 2009219 1.97% 3310
chr16 3908966 4.33% 4876
chr17 4717023 5.67% 5918
chr18 727856 0.91% 1302
chr19 5863066 10.00% 6304
chr20 2298739 3.57% 3074
chr21 775351 1.66% 1109
chr22 2401412 4.73% 2886
chrM 386 2.33% 1
chrUn_GL000218v1 274 0.17% 1
chrUn_GL000219v1 1662 0.93% 5
chrUn_KI270438v1 1417 1.26% 4
chrUn_KI270442v1 330 0.08% 1
chrX 803605 0.51% 1340
chrY 211 <0.01% 1
3336 contigs with no values (128173395 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92306 140 18568 698.05 486
global segment-length histogram

Files

Filename Size md5
ENCFF666AKX.bed.gz 1.74 MB 022f8b2df31142d2ba56ed7d6123d3a8
ENCFF666AKX.tabix.bed.gz 896.47 KB e482d1c2f900705c85b5ac642a99284b
ENCFF666AKX.tabix.bed.gz.tbi 159.35 KB d74f34b1c6ee9b4fcc577a27996d7ba5
genomic_resource.yaml 2.04 KB d0c937cb6fe6c26b5630b8cbd3e736cd
statistics/