Histone_ChIP-seq_ENCSR312HLG
Histone_ChIP-seq ENCSR312HLG [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR312HLG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR312HLG [biosamplesummary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male child (6 years) with amyotrophic lateral sclerosis output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN373PXS|/analyses/ENCAN373PXS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF698JFN|/files/ENCFF698JFN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF698JFN|/files/ENCFF698JFN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.74. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF723ZOY|/files/ENCFF723ZOY/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF723ZOY|/files/ENCFF723ZOY/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR312HLG | float |
Histone_ChIP-seq_ENCSR312HLG |
Histone_ChIP-seq ENCSR312HLG [biosample_summary="Homo sapiens from a donor with amyotrophic lateral sclerosis; motor neuron" and target="H3K27ac"]
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[1.38, 82.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF817IVB.bed.gz | 1.37 MB | e5a7794f13ffef1aac3917752621dc47 |
| ENCFF817IVB.bed.gz.dvc | 101.0 B | e8a124c39a4f81ae5200d1c5d5078bff |
| ENCFF817IVB.tabix.bed.gz | 581.28 KB | ca62aadaf4ed49beb58678f2835e89b3 |
| ENCFF817IVB.tabix.bed.gz.dvc | 106.0 B | 4a13034adc65a25b8d597b12c6f79176 |
| ENCFF817IVB.tabix.bed.gz.tbi | 224.79 KB | aa434c3f82104c35f4caee7d887ed516 |
| ENCFF817IVB.tabix.bed.gz.tbi.dvc | 110.0 B | c8f3673ce58d9861554ef9fa043b2aaf |
| genomic_resource.yaml | 4.19 KB | 9ec7c954064ea2d425089bffb75115b7 |
| genomic_resource_original.yaml | 4.03 KB | c8ce72feb3de19c4b3522bb1008a03f8 |
| statistics/ |