Resource
| Id | Histone_ChIP-seq/ENCSR312CKN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR312CKN [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN710CYG|/analyses/ENCAN710CYG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF212OWN|/files/ENCFF212OWN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 22466153 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF136KXH|/files/ENCFF136KXH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26654729 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR312CKN | float |
Histone_ChIP-seq_ENCSR312CKN |
Histone_ChIP-seq ENCSR312CKN [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K27me3"]
|
 |
[1.67, 15.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 101823898 | 3.16% | 164405 |
| chr1 | 9185038 | 3.69% | 14475 |
| chr1_KI270712v1_random | 226 | 0.13% | 1 |
| chr1_KI270713v1_random | 2443 | 6.00% | 4 |
| chr2 | 7564660 | 3.12% | 12059 |
| chr3 | 5512136 | 2.78% | 9381 |
| chr4 | 3245849 | 1.71% | 5555 |
| chr5 | 4932016 | 2.72% | 8099 |
| chr6 | 4672792 | 2.74% | 7584 |
| chr7 | 4256598 | 2.67% | 6894 |
| chr8 | 4250961 | 2.93% | 7152 |
| chr9 | 5119311 | 3.70% | 7957 |
| chr10 | 5898563 | 4.41% | 9426 |
| chr11 | 7484778 | 5.54% | 11515 |
| chr12 | 4026223 | 3.02% | 6497 |
| chr13 | 2839118 | 2.48% | 4507 |
| chr14 | 2996222 | 2.80% | 4825 |
| chr15 | 4005389 | 3.93% | 6122 |
| chr16 | 2958233 | 3.27% | 4958 |
| chr17 | 5333002 | 6.41% | 7914 |
| chr17_GL000205v2_random | 5641 | 3.04% | 12 |
| chr18 | 2446209 | 3.04% | 4151 |
| chr19 | 2281706 | 3.89% | 3808 |
| chr20 | 4882408 | 7.58% | 7431 |
| chr21 | 1456667 | 3.12% | 2203 |
| chr22 | 2858039 | 5.62% | 4289 |
| chrUn_GL000219v1 | 339 | 0.19% | 1 |
| chrX | 3609331 | 2.31% | 7585 |
| 3339 contigs with no values (185722923 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 164405 | 175 | 17136 | 619.35 | 450 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF852CSO.bed.gz | 3.15 MB | 7ee874f29040908ca11e37565c9229c3 |
| ENCFF852CSO.tabix.bed.gz | 1.56 MB | 67df1bc8e5066563923af4ce3bdb330a |
| ENCFF852CSO.tabix.bed.gz.tbi | 242.01 KB | b989f752bdae997305b23ae7478f2eb9 |
| genomic_resource.yaml | 2.71 KB | fa288f84ae975ba9efb816bc700e1ef4 |
| statistics/ |