Resource

Id Histone_ChIP-seq/ENCSR311XVLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR311XVL [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR311XVL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0003079/
  • biosample_summary: Homo sapiens fibroblast of breast female adult (26 years)
  • date_created: 2015-09-15T20:26:21.551364+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR311XVL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (26 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR311XVL float

Histone_ChIP-seq_ENCSR311XVL
Histone_ChIP-seq ENCSR311XVL [biosample_summary="Homo sapiens fibroblast of breast female adult (26 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR311XVL [1.4, 63.7]
n
10,081,028
mean
4.33
sd
1.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100810280.31% 19979
chr1 582180 0.23% 1199
chr1_KI270709v1_random 608 0.91% 2
chr2 566334 0.23% 1239
chr3 468858 0.24% 968
chr4 563023 0.30% 1148
chr4_GL000008v2_random 4092 1.95% 1
chr5 622975 0.34% 1252
chr5_GL000208v1_random 1017 1.10% 3
chr6 387300 0.23% 861
chr7 693052 0.43% 1340
chr8 403487 0.28% 843
chr9 318761 0.23% 648
chr9_KI270719v1_random 1092 0.62% 2
chr10 457239 0.34% 925
chr11 413502 0.31% 879
chr12 528650 0.40% 999
chr13 188524 0.16% 440
chr14 220881 0.21% 469
chr14_GL000194v1_random 823 0.43% 2
chr14_GL000225v1_random 2723 1.29% 7
chr14_KI270722v1_random 1146 0.59% 5
chr14_KI270725v1_random 205 0.12% 1
chr15 239765 0.24% 438
chr16 299016 0.33% 577
chr17 202633 0.24% 389
chr17_KI270729v1_random 5703 2.03% 11
chr17_KI270730v1_random 1781 1.58% 4
chr18 167716 0.21% 371
chr19 1393886 2.38% 2050
chr20 165639 0.26% 360
chr21 133377 0.29% 283
chr22 111228 0.22% 225
chr22_KI270732v1_random 806 1.94% 2
chr22_KI270733v1_random 1626 0.90% 5
chr22_KI270735v1_random 1919 4.48% 3
chr22_KI270736v1_random 9299 5.11% 17
chr22_KI270737v1_random 359 0.35% 1
chr22_KI270738v1_random 1515 1.52% 4
chrM 9001 54.32% 8
chrUn_GL000214v1 487 0.35% 2
chrUn_GL000216v2 4146 2.35% 10
chrUn_GL000224v1 3112 1.73% 4
chrUn_KI270337v1 388 34.61% 2
chrUn_KI270429v1 488 35.86% 1
chrUn_KI270435v1 921 0.99% 2
chrUn_KI270438v1 11824 10.51% 24
chrUn_KI270442v1 25934 6.61% 48
chrUn_KI270465v1 324 18.26% 1
chrUn_KI270466v1 789 63.99% 2
chrUn_KI270467v1 1555 39.67% 1
chrUn_KI270509v1 277 11.95% 1
chrUn_KI270511v1 671 8.26% 1
chrUn_KI270512v1 601 2.65% 1
chrUn_KI270519v1 1446 1.05% 4
chrUn_KI270538v1 1925 2.11% 4
chrUn_KI270580v1 261 16.81% 1
chrUn_KI270588v1 287 4.66% 1
chrUn_KI270589v1 1560 3.51% 2
chrUn_KI270591v1 838 14.46% 1
chrUn_KI270744v1 429 0.25% 1
chrUn_KI270746v1 929 1.40% 3
chrUn_KI270750v1 233 0.16% 1
chrUn_KI270751v1 1760 1.17% 3
chrUn_KI270756v1 1060 1.33% 3
chrUn_KI270757v1 1100 1.54% 2
chrX 837039 0.54% 1854
chrY 8903 0.02% 18
3299 contigs with no values (124595344 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19979 170 12831 504.58 409
global segment-length histogram

Files

Filename Size md5
ENCFF567HBM.bed.gz 367.72 KB 0b160a5d8d628ae94e4156cd173927d4
ENCFF567HBM.tabix.bed.gz 194.35 KB ecfb43fecd0e2ad1177d4e128f0cbea6
ENCFF567HBM.tabix.bed.gz.tbi 126.37 KB baa0488f25c82ff50bcec98904d8d29d
genomic_resource.yaml 2.01 KB 9c36f4085a209673d03e86d9ffb8eb66
statistics/