Resource

Id Histone_ChIP-seq/ENCSR311RXDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR311RXD [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR311RXD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 72 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:24.548887+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR311RXD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 72 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR311RXD float

Histone_ChIP-seq_ENCSR311RXD
Histone_ChIP-seq ENCSR311RXD [biosample_summary="Homo sapiens BLaER1 72 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR311RXD [1.57, 29.2]
n
243,534,418
mean
9.63
sd
5.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2435344187.57% 176068
chr1 23531597 9.45% 16612
chr1_KI270712v1_random 3483 1.98% 6
chr1_KI270713v1_random 7109 17.45% 10
chr1_KI270714v1_random 261 0.63% 1
chr2 18799361 7.76% 13986
chr3 14206389 7.16% 10710
chr3_GL000221v1_random 1324 0.85% 3
chr4 9739822 5.12% 7813
chr5 12402286 6.83% 9290
chr6 13165086 7.71% 9726
chr7 11977758 7.52% 9167
chr8 11517175 7.94% 8334
chr9 10318377 7.46% 7616
chr9_KI270718v1_random 1079 2.84% 4
chr9_KI270719v1_random 401 0.23% 1
chr10 12081661 9.03% 8795
chr11 12183454 9.02% 8442
chr12 12050776 9.04% 8388
chr13 5242920 4.58% 4207
chr14 7760670 7.25% 5521
chr14_GL000009v2_random 265 0.13% 1
chr14_GL000194v1_random 1313 0.69% 2
chr14_GL000225v1_random 611 0.29% 2
chr14_KI270723v1_random 1560 4.09% 3
chr14_KI270726v1_random 596 1.36% 2
chr15 8318167 8.16% 5885
chr15_KI270727v1_random 744 0.17% 2
chr16 9709223 10.75% 6567
chr16_KI270728v1_random 1703 0.09% 1
chr17 13131982 15.77% 8382
chr17_GL000205v2_random 23390 12.60% 11
chr18 4644406 5.78% 3661
chr19 10156608 17.33% 6270
chr20 7750761 12.03% 5448
chr21 3302067 7.07% 2408
chr22 5838022 11.49% 4025
chr22_KI270731v1_random 1719 1.14% 3
chr22_KI270733v1_random 4280 2.38% 6
chr22_KI270734v1_random 265 0.16% 1
chr22_KI270735v1_random 1753 4.09% 2
chrUn_GL000195v1 5882 3.22% 10
chrUn_GL000214v1 374 0.27% 1
chrUn_GL000216v2 1087 0.62% 1
chrUn_GL000218v1 306 0.19% 1
chrUn_GL000219v1 12806 7.15% 13
chrUn_GL000220v1 1526 0.94% 3
chrUn_GL000224v1 896 0.50% 1
chrUn_KI270442v1 311 0.08% 1
chrUn_KI270519v1 899 0.65% 2
chrUn_KI270742v1 262 0.14% 1
chrUn_KI270744v1 5720 3.40% 4
chrUn_KI270746v1 320 0.48% 1
chrUn_KI270753v1 3187 5.06% 3
chrUn_KI270755v1 394 1.07% 1
chrX 5618474 3.60% 4708
chrY 1550 <0.01% 3
3310 contigs with no values (122486481 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 176068 250 45175 1383.18 811
global segment-length histogram

Files

Filename Size md5
ENCFF781JCQ.bed.gz 3.83 MB cba4ab0acf6ddd6b0eed3c8688a829df
ENCFF781JCQ.tabix.bed.gz 1.77 MB a37ea3a94f884ccd316f77146ebe2c65
ENCFF781JCQ.tabix.bed.gz.tbi 398.9 KB ab6dffd007fefd8a1ce7ce6023fbc11a
genomic_resource.yaml 3.12 KB 18611103ce0a6e93924e5a39a1bcd4c9
statistics/