Resource

Id Histone_ChIP-seq/ENCSR308ZMDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR308ZMD [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR308ZMD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002370/
  • biosample_summary: Homo sapiens thymus tissue female embryo (110 days)
  • date_created: 2015-09-16T21:43:01.741488+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR308ZMD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (110 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR308ZMD float

Histone_ChIP-seq_ENCSR308ZMD
Histone_ChIP-seq ENCSR308ZMD [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR308ZMD [1.98, 108]
n
32,159,853
mean
38.4
sd
23.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 321598531.00% 26958
chr1 3218623 1.29% 2673
chr2 2204513 0.91% 1813
chr3 1825999 0.92% 1449
chr4 1239117 0.65% 971
chr5 1532240 0.84% 1186
chr6 1917859 1.12% 1493
chr7 1520384 0.95% 1344
chr8 1103066 0.76% 963
chr9 1234203 0.89% 1116
chr10 1335007 1.00% 1149
chr11 1680258 1.24% 1347
chr12 1739595 1.31% 1349
chr13 684074 0.60% 549
chr14 1205622 1.13% 962
chr15 1057830 1.04% 917
chr16 1252468 1.39% 1118
chr17 1915465 2.30% 1671
chr18 488169 0.61% 447
chr19 1986799 3.39% 1742
chr20 822087 1.28% 763
chr21 373350 0.80% 343
chr22 734876 1.45% 645
chrX 1088249 0.70% 948
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26958 180 16771 1192.96 913
global segment-length histogram

Files

Filename Size md5
ENCFF087HEO.bed.gz 711.21 KB d81d2a3dd5d3dbe5fa7d4e723e10dd8e
ENCFF087HEO.tabix.bed.gz 305.43 KB 25486daa1c9ef1fab2d81a4133245bcf
ENCFF087HEO.tabix.bed.gz.tbi 143.49 KB 89330328bc56f6649ad62772815a7f8b
genomic_resource.yaml 1.5 KB ebcfd6afabd10988f1fd575459f87172
statistics/