Histone_ChIP-seq_ENCSR307OAJ
Histone_ChIP-seq ENCSR307OAJ [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR307OAJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR307OAJ [biosamplesummary="Homo sapiens iPS DF 19.11" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN004MGL|/analyses/ENCAN004MGL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF980EDY|/files/ENCFF980EDY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19540402 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF773ZEH|/files/ENCFF773ZEH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20581752 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF773ZEH|/files/ENCFF773ZEH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF773ZEH|/files/ENCFF773ZEH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR307OAJ | float |
Histone_ChIP-seq_ENCSR307OAJ |
Histone_ChIP-seq ENCSR307OAJ [biosample_summary="Homo sapiens iPS DF 19.11" and target="H3K4me1"]
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[1.68, 20.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF897KEO.bed.gz | 4.12 MB | 922f670bc28cd424ea1b11e6539dd31e |
| ENCFF897KEO.bed.gz.dvc | 101.0 B | 93abae2b57cebc38e5713f8ef90fb4cb |
| ENCFF897KEO.tabix.bed.gz | 2.07 MB | c97337d18612337c8bab212a8480395b |
| ENCFF897KEO.tabix.bed.gz.dvc | 107.0 B | 089a5840f6fac13b9da86d55e0247b1a |
| ENCFF897KEO.tabix.bed.gz.tbi | 420.09 KB | 64c3a493be226833c380404d434d68eb |
| ENCFF897KEO.tabix.bed.gz.tbi.dvc | 110.0 B | b0607bfc1c655c993df0ec8fda7a6cbc |
| genomic_resource.yaml | 3.69 KB | 426bedae6a9b693cdc6c428ec25ef4f1 |
| genomic_resource_original.yaml | 3.58 KB | 7e899b6bd7914de2b6f5c6e94555a95a |
| statistics/ |