Resource
| Id | Histone_ChIP-seq/ENCSR305ISQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR305ISQ [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN168ITS|/analyses/ENCAN168ITS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF668FFL|/files/ENCFF668FFL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16619370 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR305ISQ | float |
Histone_ChIP-seq_ENCSR305ISQ |
Histone_ChIP-seq ENCSR305ISQ [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K27ac"]
|
 |
[1.85, 107] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 74192698 | 2.31% | 67549 |
| chr1 | 7669374 | 3.08% | 6697 |
| chr2 | 5501565 | 2.27% | 5164 |
| chr3 | 4155759 | 2.10% | 4004 |
| chr4 | 2601068 | 1.37% | 2514 |
| chr5 | 3457336 | 1.90% | 3163 |
| chr6 | 4043692 | 2.37% | 3791 |
| chr7 | 3208515 | 2.01% | 3027 |
| chr8 | 2571008 | 1.77% | 2548 |
| chr9 | 3411553 | 2.47% | 3118 |
| chr10 | 3552187 | 2.65% | 3291 |
| chr11 | 4201929 | 3.11% | 3554 |
| chr12 | 3734907 | 2.80% | 3343 |
| chr13 | 1431483 | 1.25% | 1360 |
| chr14 | 2804956 | 2.62% | 2476 |
| chr15 | 2551799 | 2.50% | 2323 |
| chr16 | 3042774 | 3.37% | 2789 |
| chr17 | 4675640 | 5.62% | 3899 |
| chr18 | 1237215 | 1.54% | 1231 |
| chr19 | 3714671 | 6.34% | 3077 |
| chr20 | 2186282 | 3.39% | 2048 |
| chr21 | 1029334 | 2.20% | 921 |
| chr22 | 2018802 | 3.97% | 1783 |
| chrX | 1390091 | 0.89% | 1427 |
| chrY | 758 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67549 | 200 | 21471 | 1098.35 | 752 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF496QQR.bed.gz | 1.47 MB | 6402ba92520b4416b867638882e17301 |
| ENCFF496QQR.tabix.bed.gz | 703.95 KB | 0b193223d2fdd1c2c7773d2e0fb950cc |
| ENCFF496QQR.tabix.bed.gz.tbi | 220.01 KB | 601069a2a1fc46af466365628bec5175 |
| genomic_resource.yaml | 2.01 KB | 0aa0bdbb66bdc5601ebf897b7182f6bb |
| statistics/ |