Histone_ChIP-seq_ENCSR301VIW
Histone_ChIP-seq ENCSR301VIW [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR301VIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR301VIW [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN940WYC|/analyses/ENCAN940WYC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN940WYC|/analyses/ENCAN940WYC/} has in progress subobject document {63814262-4f86-43e5-b2bc-e48e34fb9afe|/documents/63814262-4f86-43e5-b2bc-e48e34fb9afe/} audit_warning: Processed alignments file {ENCFF328EIH|/files/ENCFF328EIH/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 19545308 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF093KSG|/files/ENCFF093KSG/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF093KSG|/files/ENCFF093KSG/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR301VIW | float |
Histone_ChIP-seq_ENCSR301VIW |
Histone_ChIP-seq ENCSR301VIW [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H2AFZ"]
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[1.54, 15.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233ZZY.bed.gz | 1.77 MB | a9b9832484b15ce9a6dc63bbb1f9fb28 |
| ENCFF233ZZY.bed.gz.dvc | 101.0 B | 40d4179230ea1a2896ad81ce1ebef971 |
| ENCFF233ZZY.tabix.bed.gz | 806.22 KB | 47738aecd57ac46246877feaba0d991c |
| ENCFF233ZZY.tabix.bed.gz.dvc | 106.0 B | 567e84e16604c4af0b4cecf194d28bb9 |
| ENCFF233ZZY.tabix.bed.gz.tbi | 333.14 KB | a7dc8d80fb2f876314d8d576925688b8 |
| ENCFF233ZZY.tabix.bed.gz.tbi.dvc | 110.0 B | c4608e42194df3e46e97625ccaceac68 |
| genomic_resource.yaml | 3.47 KB | a1a7bd82524c28423b77a9233cd64a13 |
| genomic_resource_original.yaml | 3.34 KB | d5312185a1f647dada94d8b688b59784 |
| statistics/ |