Histone_ChIP-seq_ENCSR301HRV
Histone_ChIP-seq ENCSR301HRV [biosample_summary="Homo sapiens H1" and target="H3K79me2"]
×
| Id: | Histone_ChIP-seq/ENCSR301HRV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR301HRV [biosamplesummary="Homo sapiens H1" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN381NBA|/analyses/ENCAN381NBA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN381NBA|/analyses/ENCAN381NBA/} has in progress subobject document {2fbea9e2-f574-4487-b998-6614855125eb|/documents/2fbea9e2-f574-4487-b998-6614855125eb/} audit_not_compliant: Processed alignments file {ENCFF499XCE|/files/ENCFF499XCE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14543920 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF015TSL|/files/ENCFF015TSL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25772374 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF015TSL|/files/ENCFF015TSL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF015TSL|/files/ENCFF015TSL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR301HRV | float |
Histone_ChIP-seq_ENCSR301HRV |
Histone_ChIP-seq ENCSR301HRV [biosample_summary="Homo sapiens H1" and target="H3K79me2"]
|
|
[1.68, 15.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF620GIW.bed.gz | 464.06 KB | fcabb67cb4ed1b188045a191889fdfe9 |
| ENCFF620GIW.bed.gz.dvc | 100.0 B | f38f0157f79a43490714cec264443739 |
| ENCFF620GIW.tabix.bed.gz | 232.14 KB | 5af4cd4543c975aec6f46aae69fb43f9 |
| ENCFF620GIW.tabix.bed.gz.dvc | 106.0 B | 8c698ebd6a4d4335defaaf818c7d06c3 |
| ENCFF620GIW.tabix.bed.gz.tbi | 75.28 KB | 9c50c4799e0b5f3240ea2dcf1c600099 |
| ENCFF620GIW.tabix.bed.gz.tbi.dvc | 109.0 B | 1fb106f08d0877ad2f942b650b0c2c02 |
| genomic_resource.yaml | 3.92 KB | 8b8dcca1053554035f7bede1705c2ace |
| genomic_resource_original.yaml | 3.81 KB | 095038933a9c74947b7a7c3cc5749039 |
| statistics/ |