Resource
| Id | Histone_ChIP-seq/ENCSR300WWL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR300WWL [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN329IAI|/analyses/ENCAN329IAI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305QYG|/files/ENCFF305QYG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305QYG|/files/ENCFF305QYG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR300WWL | float |
Histone_ChIP-seq_ENCSR300WWL |
Histone_ChIP-seq ENCSR300WWL [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="H3K4me3"]
|
 |
[1.75, 81.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58796823 | 1.83% | 34816 |
| chr1 | 5760549 | 2.31% | 3361 |
| chr2 | 4054783 | 1.67% | 2430 |
| chr3 | 3466561 | 1.75% | 1986 |
| chr4 | 2561885 | 1.35% | 1526 |
| chr5 | 2907520 | 1.60% | 1705 |
| chr6 | 3472287 | 2.03% | 2014 |
| chr7 | 2892793 | 1.82% | 1775 |
| chr8 | 2338075 | 1.61% | 1435 |
| chr9 | 2478703 | 1.79% | 1498 |
| chr10 | 2667245 | 1.99% | 1619 |
| chr11 | 3098909 | 2.29% | 1741 |
| chr12 | 3162787 | 2.37% | 1775 |
| chr13 | 1344404 | 1.18% | 851 |
| chr14 | 1802427 | 1.68% | 1041 |
| chr15 | 1908345 | 1.87% | 1100 |
| chr16 | 2154903 | 2.39% | 1334 |
| chr17 | 3212036 | 3.86% | 1837 |
| chr18 | 1129508 | 1.41% | 727 |
| chr19 | 3342604 | 5.70% | 1952 |
| chr20 | 1474271 | 2.29% | 906 |
| chr21 | 598757 | 1.28% | 396 |
| chr22 | 1235036 | 2.43% | 730 |
| chrX | 1672811 | 1.07% | 1046 |
| chrY | 59624 | 0.10% | 31 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 34816 | 210 | 28251 | 1688.79 | 1225 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF157RHV.bed.gz | 932.94 KB | 90efaca0005aee7e88547565348fc934 |
| ENCFF157RHV.tabix.bed.gz | 401.62 KB | 5f572f0431721ec3defcc67517348da6 |
| ENCFF157RHV.tabix.bed.gz.tbi | 205.99 KB | 4a12b749549848ad911e354d0436b8a1 |
| genomic_resource.yaml | 2.79 KB | 3667b68abe795c4ec5acdb38405661da |
| statistics/ |