Histone_ChIP-seq_ENCSR300WWL
Histone_ChIP-seq ENCSR300WWL [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR300WWL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR300WWL [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN329IAI|/analyses/ENCAN329IAI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF305QYG|/files/ENCFF305QYG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF305QYG|/files/ENCFF305QYG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR300WWL | float |
Histone_ChIP-seq_ENCSR300WWL |
Histone_ChIP-seq ENCSR300WWL [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)" and target="H3K4me3"]
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[1.75, 81.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF157RHV.bed.gz | 932.94 KB | 90efaca0005aee7e88547565348fc934 |
| ENCFF157RHV.bed.gz.dvc | 100.0 B | c8acd8bb44ba6a2cbb0b491df9133d15 |
| ENCFF157RHV.tabix.bed.gz | 401.62 KB | 5f572f0431721ec3defcc67517348da6 |
| ENCFF157RHV.tabix.bed.gz.dvc | 106.0 B | 38174e6f0134a9dd5db67e6b434629bd |
| ENCFF157RHV.tabix.bed.gz.tbi | 205.99 KB | 4a12b749549848ad911e354d0436b8a1 |
| ENCFF157RHV.tabix.bed.gz.tbi.dvc | 110.0 B | fc703787e8deac4f537f0a42337902e0 |
| genomic_resource.yaml | 2.79 KB | 3667b68abe795c4ec5acdb38405661da |
| genomic_resource_original.yaml | 2.65 KB | 881c939c7ca56a26b23a9be24eb3d54b |
| statistics/ |