Histone_ChIP-seq_ENCSR298PMB
Histone_ChIP-seq ENCSR298PMB [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR298PMB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR298PMB [biosamplesummary="Homo sapiens thymus tissue male child (3 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN010JFC|/analyses/ENCAN010JFC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF283PVE|/files/ENCFF283PVE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 44818649 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF430XIR|/files/ENCFF430XIR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF430XIR|/files/ENCFF430XIR/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR298PMB | float |
Histone_ChIP-seq_ENCSR298PMB |
Histone_ChIP-seq ENCSR298PMB [biosample_summary="Homo sapiens thymus tissue male child (3 years)" and target="H3K9me3"]
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[1.33, 15.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF853MVL.bed.gz | 634.6 KB | 9608c349165e15b79110eb2415d10c37 |
| ENCFF853MVL.bed.gz.dvc | 100.0 B | d9e443e07e4ac75f622b64edb70f1650 |
| ENCFF853MVL.tabix.bed.gz | 349.03 KB | 5b80101e4b2a10ba7f1c66d771cd9ef4 |
| ENCFF853MVL.tabix.bed.gz.dvc | 106.0 B | ec66fccd7c122cc33ce35dd67daf3e25 |
| ENCFF853MVL.tabix.bed.gz.tbi | 214.92 KB | f2343a7aee0644a054ae271c47541c02 |
| ENCFF853MVL.tabix.bed.gz.tbi.dvc | 110.0 B | 6199ece3c90ff8dda80c4955c0795e99 |
| genomic_resource.yaml | 3.21 KB | 98be0da956391dc3a4cc9ef58a94b687 |
| genomic_resource_original.yaml | 3.07 KB | 1216e38690496713700511afa982c02d |
| statistics/ |