Histone_ChIP-seq_ENCSR294WUR
Histone_ChIP-seq ENCSR294WUR [biosample_summary="Homo sapiens H9" and target="H3K18ac"]
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| Id: | Histone_ChIP-seq/ENCSR294WUR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR294WUR [biosamplesummary="Homo sapiens H9" and target="H3K18ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN096ESF|/analyses/ENCAN096ESF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF500NHK|/files/ENCFF500NHK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14359840 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K18ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF155VYC|/files/ENCFF155VYC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF155VYC|/files/ENCFF155VYC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR294WUR | float |
Histone_ChIP-seq_ENCSR294WUR |
Histone_ChIP-seq ENCSR294WUR [biosample_summary="Homo sapiens H9" and target="H3K18ac"]
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[1.67, 33.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF937DWI.bed.gz | 969.35 KB | 6f8b02320048fabc0b46f5398d676ea2 |
| ENCFF937DWI.bed.gz.dvc | 100.0 B | 684f496ad3ee7932025942995faca934 |
| ENCFF937DWI.tabix.bed.gz | 456.47 KB | 19eadbb460a5d0084ceb09c3381f3a8e |
| ENCFF937DWI.tabix.bed.gz.dvc | 106.0 B | a9627f016b8f34c0a26eb328b8eb8fc9 |
| ENCFF937DWI.tabix.bed.gz.tbi | 214.64 KB | 96c355b140df415cf4927030b80d14c3 |
| ENCFF937DWI.tabix.bed.gz.tbi.dvc | 110.0 B | 71df5d29dbe83a2976358074087bbcef |
| genomic_resource.yaml | 3.15 KB | e38e46772731b6c6cbe1b46eb0d0a428 |
| genomic_resource_original.yaml | 3.04 KB | 5b3a6687738d201fa7de84a567cb73e5 |
| statistics/ |