Histone_ChIP-seq_ENCSR293NAJ
Histone_ChIP-seq ENCSR293NAJ [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H4K20me1"]
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| Id: | Histone_ChIP-seq/ENCSR293NAJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR293NAJ [biosamplesummary="Homo sapiens GM23338 originated from GM23248" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN390BIN|/analyses/ENCAN390BIN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF254FGF|/files/ENCFF254FGF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 27499762 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF480HKL|/files/ENCFF480HKL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 16265007 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF480HKL|/files/ENCFF480HKL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF480HKL|/files/ENCFF480HKL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.09. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR293NAJ | float |
Histone_ChIP-seq_ENCSR293NAJ |
Histone_ChIP-seq ENCSR293NAJ [biosample_summary="Homo sapiens GM23338 originated from GM23248" and target="H4K20me1"]
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[1.46, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF300RQZ.bed.gz | 1.42 MB | 03d0e4b6c64266a011638aa2762b20d4 |
| ENCFF300RQZ.bed.gz.dvc | 101.0 B | b8ac6c357f00bb8e8e6e6ebf6dcd7f41 |
| ENCFF300RQZ.tabix.bed.gz | 679.12 KB | 8ea3c208f90340f8c7bbc7823187e388 |
| ENCFF300RQZ.tabix.bed.gz.dvc | 106.0 B | c906d51d5f3cb73414b230e99d06045f |
| ENCFF300RQZ.tabix.bed.gz.tbi | 160.74 KB | 0e93d4ba137fd36702fdedc9484c144c |
| ENCFF300RQZ.tabix.bed.gz.tbi.dvc | 110.0 B | 9b562392965a81a058840312738fc315 |
| genomic_resource.yaml | 3.78 KB | 2fb4d5686988eed15bf023dbeb725700 |
| genomic_resource_original.yaml | 3.65 KB | 111d33313471d1366707b8e802cf2e39 |
| statistics/ |