Resource

Id Histone_ChIP-seq/ENCSR293MTQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR293MTQ [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR293MTQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence
  • date_created: 2017-03-22T16:16:52.957032+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR293MTQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (15 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR293MTQ float

Histone_ChIP-seq_ENCSR293MTQ
Histone_ChIP-seq ENCSR293MTQ [biosample_summary="Homo sapiens neurosphere embryo (15 weeks) originated from ganglionic eminence" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR293MTQ [1.68, 112]
n
23,346,345
mean
41.7
sd
23.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 233463450.73% 22767
chr1 2234578 0.90% 2206
chr2 1605874 0.66% 1534
chr3 1281521 0.65% 1228
chr4 910296 0.48% 826
chr5 1071551 0.59% 1035
chr6 1254710 0.73% 1243
chr7 1162102 0.73% 1135
chr8 886878 0.61% 838
chr9 983613 0.71% 960
chr10 966387 0.72% 971
chr11 1269079 0.94% 1245
chr12 1146086 0.86% 1086
chr13 482406 0.42% 443
chr14 744371 0.70% 731
chr15 752541 0.74% 730
chr16 1024749 1.13% 986
chr17 1373748 1.65% 1355
chr18 403620 0.50% 382
chr19 1659767 2.83% 1665
chr20 625841 0.97% 611
chr21 230121 0.49% 244
chr22 538372 1.06% 579
chrX 712345 0.46% 709
chrY 25789 0.05% 25
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22767 170 6808 1025.45 930
global segment-length histogram

Files

Filename Size md5
ENCFF635MAB.bed.gz 576.67 KB 03459934ba91d7e9ad9a9bd1d3eb3565
ENCFF635MAB.tabix.bed.gz 255.63 KB 4a727f3780dd43e2dd97da8161d60a49
ENCFF635MAB.tabix.bed.gz.tbi 146.92 KB 189599608acfece68fe235eb83dbc8ae
genomic_resource.yaml 2.06 KB de5f9db1ac36364890707e2f007f8bd8
statistics/