Histone_ChIP-seq_ENCSR292WQY
Histone_ChIP-seq ENCSR292WQY [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR292WQY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR292WQY [biosamplesummary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (46 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN778VBP|/analyses/ENCAN778VBP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF763DXP|/files/ENCFF763DXP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 5335469 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF763DXP|/files/ENCFF763DXP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF763DXP|/files/ENCFF763DXP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR292WQY | float |
Histone_ChIP-seq_ENCSR292WQY |
Histone_ChIP-seq ENCSR292WQY [biosample_summary="Homo sapiens endocrine pancreas tissue male adult (46 years)" and target="H3K4me1"]
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[2.16, 16.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF571ZWG.bed.gz | 977.29 KB | 9ca49d8040093cca1b8f3781bcbc99af |
| ENCFF571ZWG.bed.gz.dvc | 101.0 B | c7fe738e9802142c9c0c427be51fb5ac |
| ENCFF571ZWG.tabix.bed.gz | 510.07 KB | a4515b7e70d7d065140d3e077b075266 |
| ENCFF571ZWG.tabix.bed.gz.dvc | 106.0 B | 42355c5c73bfb218481759c66dddd07e |
| ENCFF571ZWG.tabix.bed.gz.tbi | 224.29 KB | dca98d59336d93c03b635745f1846f0d |
| ENCFF571ZWG.tabix.bed.gz.tbi.dvc | 110.0 B | 853ff455f1fef15bfea4fb89eb3d4148 |
| genomic_resource.yaml | 3.28 KB | 7b3c9a9643a63a0d1cbde3da04ce4cab |
| genomic_resource_original.yaml | 3.14 KB | aff13f855fb61db5b197b71bf063169f |
| statistics/ |