Resource

Id Histone_ChIP-seq/ENCSR291PVScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR291PVS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR291PVS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001003/
  • biosample_summary: Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)
  • date_created: 2020-07-02T16:43:30.924560+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR291PVS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years) with squamous cell carcinoma
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR291PVS float

Histone_ChIP-seq_ENCSR291PVS
Histone_ChIP-seq ENCSR291PVS [biosample_summary="Homo sapiens with squamous cell carcinoma; skin epidermis tissue male adult (78 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR291PVS [1.79, 53.9]
n
34,748,999
mean
20.5
sd
10.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 347489991.08% 20288
chr1 3551837 1.43% 2073
chr2 2412789 1.00% 1352
chr3 1954220 0.99% 1118
chr4 1318651 0.69% 740
chr5 1639902 0.90% 878
chr6 2033811 1.19% 1160
chr7 1686015 1.06% 1014
chr8 1245455 0.86% 722
chr9 1414042 1.02% 860
chr10 1449336 1.08% 821
chr11 1900768 1.41% 1063
chr12 1870715 1.40% 1042
chr13 698109 0.61% 414
chr14 1135799 1.06% 659
chr15 1112488 1.09% 655
chr16 1363610 1.51% 834
chr17 2107873 2.53% 1214
chr18 577148 0.72% 336
chr19 2189919 3.74% 1428
chr20 895430 1.39% 539
chr21 353287 0.76% 206
chr22 810333 1.59% 500
chrX 990816 0.63% 641
chrY 36646 0.06% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20288 270 14996 1712.79 1564
global segment-length histogram

Files

Filename Size md5
ENCFF126LBQ.bed.gz 557.13 KB 9d0b23f13af0b38f2e338d40ecd60871
ENCFF126LBQ.tabix.bed.gz 239.4 KB b16e5dd91bf1c3cc38d13afc9552d836
ENCFF126LBQ.tabix.bed.gz.tbi 138.67 KB f00871f33e32d6ba7ca20abc6ab6575e
genomic_resource.yaml 1.87 KB c1d014ed3884f38ceb09bd55baba24ee
statistics/