| Id: | Histone_ChIP-seq/ENCSR290EHP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR290EHP [biosamplesummary="Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) stably expressing C-terminal eGFP-tagged HES5 output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN042QTX|/analyses/ENCAN042QTX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF471TCH|/files/ENCFF471TCH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 24489886 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF305ESR|/files/ENCFF305ESR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 33625876 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR290EHP | float |
Histone_ChIP-seq_ENCSR290EHP |
Histone_ChIP-seq ENCSR290EHP [biosample_summary="Homo sapiens mid-neurogenesis radial glial cells stably expressing HES5 originated from H9" and target="H3K4me1"]
|
 |
[1.57, 11.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF566RVL.bed.gz | 1.74 MB | 24f1239acde35c04ad88470649687d8d |
| ENCFF566RVL.bed.gz.dvc | 101.0 B | 5f1576d8435934c20428f43f81b097b9 |
| ENCFF566RVL.tabix.bed.gz | 846.67 KB | 88dc36d8970188973230a18b2c3df06c |
| ENCFF566RVL.tabix.bed.gz.dvc | 106.0 B | e121c4eadc7f7ee1936d2ef6eaddbef0 |
| ENCFF566RVL.tabix.bed.gz.tbi | 308.6 KB | 414ebc9b8c774d84db81efde7cbb93d9 |
| ENCFF566RVL.tabix.bed.gz.tbi.dvc | 110.0 B | b690f0e1c47eeeb4ce1d75bfb75879a7 |
| genomic_resource.yaml | 2.71 KB | 0f251875b3dd8b1d807c9a6d4c2228e1 |
| genomic_resource_original.yaml | 2.54 KB | 3ec5c8e058272df334a0ba3a9f0cf1a8 |
| statistics/ |