Resource
| Id | Histone_ChIP-seq/ENCSR288QJI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR288QJI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN398ACE|/analyses/ENCAN398ACE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF817QFX|/files/ENCFF817QFX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 40772422 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR288QJI | float |
Histone_ChIP-seq_ENCSR288QJI |
Histone_ChIP-seq ENCSR288QJI [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)" and target="H3K27me3"]
|
 |
[1.69, 15.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53829748 | 1.67% | 62337 |
| chr1 | 5535402 | 2.22% | 6487 |
| chr2 | 3873319 | 1.60% | 4584 |
| chr3 | 1801717 | 0.91% | 2262 |
| chr4 | 1970029 | 1.04% | 2116 |
| chr5 | 2583340 | 1.42% | 2749 |
| chr6 | 3150800 | 1.84% | 3361 |
| chr7 | 2837665 | 1.78% | 3103 |
| chr8 | 2269989 | 1.56% | 2784 |
| chr9 | 2107513 | 1.52% | 2378 |
| chr10 | 2939232 | 2.20% | 3405 |
| chr11 | 2541085 | 1.88% | 3178 |
| chr12 | 2686308 | 2.02% | 3226 |
| chr13 | 1239771 | 1.08% | 1397 |
| chr14 | 1929813 | 1.80% | 2278 |
| chr15 | 1519344 | 1.49% | 1928 |
| chr16 | 1938539 | 2.15% | 2377 |
| chr17 | 3549454 | 4.26% | 3682 |
| chr18 | 902523 | 1.12% | 1141 |
| chr19 | 3185532 | 5.43% | 3555 |
| chr20 | 2680467 | 4.16% | 3119 |
| chr21 | 578707 | 1.24% | 715 |
| chr22 | 1729385 | 3.40% | 2190 |
| chrX | 271109 | 0.17% | 309 |
| chrY | 8705 | 0.02% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 62337 | 185 | 56480 | 863.53 | 543 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF788OWT.bed.gz | 1.04 MB | 8f514b45aa4ae7fcfccd693742dcf3c5 |
| ENCFF788OWT.tabix.bed.gz | 568.85 KB | 0e8d7d7d842cc5ece632f8276f429dc5 |
| ENCFF788OWT.tabix.bed.gz.tbi | 153.59 KB | af05ac2d5855f4701ff6703d852f030d |
| genomic_resource.yaml | 2.01 KB | 0341ec213fe6ca49ee4221aea1f5c433 |
| statistics/ |