Histone_ChIP-seq_ENCSR287UQG
Histone_ChIP-seq ENCSR287UQG [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR287UQG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR287UQG [biosamplesummary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN319XFP|/analyses/ENCAN319XFP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF208UNP|/files/ENCFF208UNP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21843697 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF208UNP|/files/ENCFF208UNP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF208UNP|/files/ENCFF208UNP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.76. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR287UQG | float |
Histone_ChIP-seq_ENCSR287UQG |
Histone_ChIP-seq ENCSR287UQG [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K36me3"]
|
|
[1.82, 30] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF572JWD.bed.gz | 2.22 MB | 07e4e7019b161fcde20706170aa33ff1 |
| ENCFF572JWD.bed.gz.dvc | 101.0 B | 7c1ced9ba3297b0f33b9f655415f087d |
| ENCFF572JWD.tabix.bed.gz | 1.08 MB | 62926969ecc12da44762eb4c21d911e6 |
| ENCFF572JWD.tabix.bed.gz.dvc | 107.0 B | 9e4a3453b9f59ebf3dfc68e220f53c84 |
| ENCFF572JWD.tabix.bed.gz.tbi | 185.51 KB | 9805ec3f2b129fb27f1f532c161182b6 |
| ENCFF572JWD.tabix.bed.gz.tbi.dvc | 110.0 B | e4f325b4c4c2bbbf0c91f61d2807b9f1 |
| genomic_resource.yaml | 3.3 KB | 44e1fb52364aa7354bd941639b3219e8 |
| genomic_resource_original.yaml | 3.15 KB | 97e827408559f408f37423308c844463 |
| statistics/ |