Resource
| Id | Histone_ChIP-seq/ENCSR277WTO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR277WTO [biosample_summary="Homo sapiens T-cell" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: replicated peaks audit_error: Processed redacted alignments file {ENCFF601BYU|/files/ENCFF601BYU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 4666641 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN190YUI|/analyses/ENCAN190YUI/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF883WRZ|/files/ENCFF883WRZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 9491226 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR277WTO | float |
Histone_ChIP-seq_ENCSR277WTO |
Histone_ChIP-seq ENCSR277WTO [biosample_summary="Homo sapiens T-cell" and target="H3K27me3"]
|
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[2.31, 9.12] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7705174 | 0.24% | 24238 |
| chr1 | 725404 | 0.29% | 2333 |
| chr2 | 597657 | 0.25% | 1828 |
| chr3 | 320537 | 0.16% | 1008 |
| chr4 | 362229 | 0.19% | 1048 |
| chr5 | 528137 | 0.29% | 1588 |
| chr6 | 683873 | 0.40% | 2002 |
| chr7 | 363942 | 0.23% | 1124 |
| chr8 | 349793 | 0.24% | 1075 |
| chr9 | 328825 | 0.24% | 1081 |
| chr10 | 408355 | 0.31% | 1294 |
| chr11 | 414548 | 0.31% | 1332 |
| chr12 | 376323 | 0.28% | 1149 |
| chr13 | 211894 | 0.19% | 623 |
| chr14 | 274310 | 0.26% | 883 |
| chr15 | 340082 | 0.33% | 1079 |
| chr16 | 200759 | 0.22% | 672 |
| chr17 | 289910 | 0.35% | 967 |
| chr18 | 172449 | 0.21% | 546 |
| chr19 | 229524 | 0.39% | 789 |
| chr20 | 263788 | 0.41% | 875 |
| chr21 | 59399 | 0.13% | 183 |
| chr22 | 91352 | 0.18% | 308 |
| chrX | 112084 | 0.07% | 451 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24238 | 153 | 2506 | 317.9 | 259 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF497BBM.bed.gz | 390.69 KB | 9db7ebc1d1c779ed93b2c91843e9abf8 |
| ENCFF497BBM.tabix.bed.gz | 221.43 KB | 907887d331ff1e15160887ca68c1c5e4 |
| ENCFF497BBM.tabix.bed.gz.tbi | 95.72 KB | f657f10599bcc9f6742b36af942219e1 |
| genomic_resource.yaml | 2.47 KB | a293400dab98e89c707a60322e814daa |
| statistics/ |
