Resource

Id Histone_ChIP-seq/ENCSR277SUGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR277SUG [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR277SUG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue female adult (51 years)
  • date_created: 2019-01-28T12:19:39.355665+00:00
  • date_released: 2019-02-11
  • doi: 10.17989/ENCSR277SUG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR277SUG float

Histone_ChIP-seq_ENCSR277SUG
Histone_ChIP-seq ENCSR277SUG [biosample_summary="Homo sapiens sigmoid colon tissue female adult (51 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR277SUG [1.54, 11.1]
n
188,003,830
mean
4.22
sd
1.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1880038305.84% 114526
chr1 18495736 7.43% 10765
chr1_KI270712v1_random 2745 1.56% 3
chr2 15638717 6.46% 9556
chr3 13543951 6.83% 8154
chr4 8833920 4.64% 5798
chr5 9952412 5.48% 6239
chr6 10013795 5.86% 6640
chr7 9344623 5.86% 5999
chr8 7869307 5.42% 5120
chr9 9144167 6.61% 5186
chr10 10945512 8.18% 6263
chr11 10058496 7.45% 5904
chr12 9687235 7.27% 5742
chr13 4722193 4.13% 3017
chr14 6505413 6.08% 3878
chr15 6512288 6.39% 3964
chr16 6089286 6.74% 3647
chr17 8393064 10.08% 4695
chr17_GL000205v2_random 2133 1.15% 1
chr18 3775714 4.70% 2444
chr19 5849695 9.98% 3522
chr20 4982820 7.73% 2991
chr21 1906009 4.08% 1222
chr22 3907374 7.69% 2206
chrUn_GL000195v1 992 0.54% 2
chrUn_GL000219v1 2716 1.52% 3
chrUn_KI270438v1 451 0.40% 1
chrUn_KI270467v1 1634 41.68% 1
chrX 1821432 1.17% 1563
3337 contigs with no values (185464347 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114526 275 62732 1641.58 1214
global segment-length histogram

Files

Filename Size md5
ENCFF602XFY.bed.gz 2.75 MB 2f774408b33de107bef5e528a35ac9bc
ENCFF602XFY.tabix.bed.gz 1.22 MB 0d8724525b3f8434ba685ccaa3896e7d
ENCFF602XFY.tabix.bed.gz.tbi 310.47 KB 6e53224cb700a4cc706a407b7c8b68e6
genomic_resource.yaml 1.51 KB 7cd6fdd0cd5c470c0071ad61beb75443
statistics/