Histone_ChIP-seq_ENCSR276ZBE
Histone_ChIP-seq ENCSR276ZBE [biosample_summary="Homo sapiens iPS-15b" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR276ZBE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR276ZBE [biosamplesummary="Homo sapiens iPS-15b" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN479IUT|/analyses/ENCAN479IUT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN479IUT|/analyses/ENCAN479IUT/} has in progress subobject document {c7b5e400-c3f1-40d2-a310-0fb6bc013b47|/documents/c7b5e400-c3f1-40d2-a310-0fb6bc013b47/} audit_not_compliant: Processed alignments file {ENCFF281EGX|/files/ENCFF281EGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24753894 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF281EGX|/files/ENCFF281EGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF281EGX|/files/ENCFF281EGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR276ZBE | float |
Histone_ChIP-seq_ENCSR276ZBE |
Histone_ChIP-seq ENCSR276ZBE [biosample_summary="Homo sapiens iPS-15b" and target="H3K4me1"]
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[1.84, 15.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF945ZPG.bed.gz | 2.44 MB | 0237636a23eb3ff7a7a9a950e65f8061 |
| ENCFF945ZPG.bed.gz.dvc | 101.0 B | bb2a0ec2c067d8ef3f836dee09343c5f |
| ENCFF945ZPG.tabix.bed.gz | 1.24 MB | aee4b32eac438c76b4e424d8ba21ba75 |
| ENCFF945ZPG.tabix.bed.gz.dvc | 107.0 B | 40fd4a7c28b7d75aa258bb5cb6e2f120 |
| ENCFF945ZPG.tabix.bed.gz.tbi | 430.05 KB | 640bc423dbf291e3442f9f88e57bdfbd |
| ENCFF945ZPG.tabix.bed.gz.tbi.dvc | 110.0 B | e1b72f918fd5d0c69844eebb7230e635 |
| genomic_resource.yaml | 3.42 KB | 7eefcce852ed69dbba956cb4190b9d47 |
| genomic_resource_original.yaml | 3.31 KB | d4c8458726745f98910b4a9cec811d1d |
| statistics/ |