Histone_ChIP-seq_ENCSR276OLB
Histone_ChIP-seq ENCSR276OLB [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR276OLB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR276OLB [biosamplesummary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN778AHN|/analyses/ENCAN778AHN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF880FIW|/files/ENCFF880FIW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 41520503 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF842LAD|/files/ENCFF842LAD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF842LAD|/files/ENCFF842LAD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR276OLB | float |
Histone_ChIP-seq_ENCSR276OLB |
Histone_ChIP-seq ENCSR276OLB [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2" and target="H3K4me1"]
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[1.42, 7.54] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF584EEA.bed.gz | 2.56 MB | 0d21100f80b286454558d97496241848 |
| ENCFF584EEA.bed.gz.dvc | 101.0 B | edba538ace10d71ec40325f37d7493c0 |
| ENCFF584EEA.tabix.bed.gz | 1.18 MB | 7ef253255091521787e7eab742696bbe |
| ENCFF584EEA.tabix.bed.gz.dvc | 107.0 B | 39c31c9ba9b124e9d8557e2f7057aea8 |
| ENCFF584EEA.tabix.bed.gz.tbi | 372.91 KB | 51133cfa59fd3473b097a29f71e797a4 |
| ENCFF584EEA.tabix.bed.gz.tbi.dvc | 110.0 B | af2fa366a1b8fadd76f607b9be08f7ec |
| genomic_resource.yaml | 3.24 KB | 070c9d263e9d55e4a2002bedc8c075b1 |
| genomic_resource_original.yaml | 3.11 KB | cbc4736922c510fedcb244a7ac295368 |
| statistics/ |