Histone_ChIP-seq_ENCSR275NCH
Histone_ChIP-seq ENCSR275NCH [biosample_summary="Homo sapiens PC-3" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR275NCH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR275NCH [biosamplesummary="Homo sapiens PC-3" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN993XEY|/analyses/ENCAN993XEY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF899ARW|/files/ENCFF899ARW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR275NCH | float |
Histone_ChIP-seq_ENCSR275NCH |
Histone_ChIP-seq ENCSR275NCH [biosample_summary="Homo sapiens PC-3" and target="H3K4me3"]
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[1.52, 48] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF042TQB.bed.gz | 1.25 MB | 5b8c1cbc183a885b40ae475bc84a112b |
| ENCFF042TQB.bed.gz.dvc | 101.0 B | 5c724a9dd42bb149e18044e3a78c37ab |
| ENCFF042TQB.tabix.bed.gz | 528.27 KB | 3425c7d756624b33ce23d380f303ad44 |
| ENCFF042TQB.tabix.bed.gz.dvc | 106.0 B | f1b38a013082877c852b4d69009b693c |
| ENCFF042TQB.tabix.bed.gz.tbi | 229.91 KB | ac0d710d96404825255a5fe65de84f3d |
| ENCFF042TQB.tabix.bed.gz.tbi.dvc | 110.0 B | e3612567f4541b2b7181ca47b1a06ea9 |
| genomic_resource.yaml | 2.02 KB | e712546ecb1aac987afc498e3a5bb647 |
| genomic_resource_original.yaml | 1.92 KB | 398f8f3617c6034c296b9de94f7e0a46 |
| statistics/ |