Resource

Id Histone_ChIP-seq/ENCSR274OIJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR274OIJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR274OIJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:02:06.573123+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR274OIJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR274OIJ float

Histone_ChIP-seq_ENCSR274OIJ
Histone_ChIP-seq ENCSR274OIJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR274OIJ [1.44, 7.04]
n
142,596,816
mean
3.19
sd
0.778

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1425968164.43% 138576
chr1 13101504 5.26% 12470
chr2 12109419 5.00% 11619
chr3 10027320 5.06% 9748
chr4 7414863 3.90% 7274
chr5 8861230 4.88% 8406
chr6 8677974 5.08% 8397
chr7 7207204 4.52% 6947
chr8 6607996 4.55% 6541
chr9 6437341 4.65% 6121
chr10 7285700 5.45% 7041
chr11 7895485 5.84% 7556
chr12 7216696 5.41% 7012
chr13 4244630 3.71% 4055
chr14 4959698 4.63% 4665
chr15 4893649 4.80% 4623
chr16 4253314 4.71% 4310
chr17 5185867 6.23% 5119
chr18 4022701 5.01% 3665
chr19 2162424 3.69% 2589
chr20 3532727 5.48% 3488
chr21 1314431 2.81% 1336
chr22 2362273 4.65% 2415
chrX 2822370 1.81% 3179
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 138576 203 14093 1029.02 805
global segment-length histogram

Files

Filename Size md5
ENCFF149WZA.bed.gz 3.27 MB d9833f24c06cd0a15e05172b5a8cbe35
ENCFF149WZA.tabix.bed.gz 1.46 MB 4ccbe2ef2159ec1b4c082d40d856d981
ENCFF149WZA.tabix.bed.gz.tbi 442.92 KB 2060e7c56455703b868e0d2bfdeceb11
genomic_resource.yaml 1.74 KB 74b699d5e59e3a492834b8c8cc7a6799
statistics/