Resource

Id Histone_ChIP-seq/ENCSR274HDQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR274HDQ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR274HDQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-04-30T04:18:00.600573+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR274HDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR274HDQ float

Histone_ChIP-seq_ENCSR274HDQ
Histone_ChIP-seq ENCSR274HDQ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR274HDQ [2.02, 35.6]
n
36,147,242
mean
14.3
sd
6.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 361472421.12% 24536
chr1 3537614 1.42% 2350
chr2 2507077 1.04% 1674
chr3 2172447 1.10% 1405
chr4 1520931 0.80% 959
chr5 1829342 1.01% 1180
chr6 2121003 1.24% 1425
chr7 1729884 1.09% 1198
chr8 1419774 0.98% 957
chr9 1482958 1.07% 1044
chr10 1560287 1.17% 1044
chr11 1928443 1.43% 1265
chr12 1922287 1.44% 1284
chr13 834612 0.73% 556
chr14 1193442 1.11% 795
chr15 1131274 1.11% 769
chr16 1365207 1.51% 938
chr17 1979059 2.38% 1366
chr18 679726 0.85% 456
chr19 2191038 3.74% 1603
chr20 893033 1.39% 641
chr21 343531 0.74% 250
chr22 774828 1.52% 562
chrX 1029445 0.66% 815
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24536 190 13101 1473.23 1286
global segment-length histogram

Files

Filename Size md5
ENCFF184MEF.bed.gz 603.46 KB 77b4009e6fd23de0e7b442f35642b16f
ENCFF184MEF.tabix.bed.gz 274.79 KB 97f7aed2a7b535ad57b5bdcc09bae66b
ENCFF184MEF.tabix.bed.gz.tbi 153.03 KB 1d90050bb983bdbddf8c33080519a497
genomic_resource.yaml 1.61 KB e541313e4584ac96fb13a80e1db32315
statistics/