Resource
| Id | Histone_ChIP-seq/ENCSR273NXD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR273NXD [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (16 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN195AZY|/analyses/ENCAN195AZY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF680SCI|/files/ENCFF680SCI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21560665 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR273NXD | float |
Histone_ChIP-seq_ENCSR273NXD |
Histone_ChIP-seq ENCSR273NXD [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K27me3"]
|
 |
[1.78, 55.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 28502937 | 0.89% | 47936 |
| chr1 | 2796398 | 1.12% | 4620 |
| chr1_KI270709v1_random | 862 | 1.29% | 2 |
| chr1_KI270712v1_random | 1689 | 0.96% | 4 |
| chr1_KI270713v1_random | 2089 | 5.13% | 5 |
| chr2 | 1778936 | 0.73% | 3025 |
| chr3 | 823906 | 0.42% | 1467 |
| chr4 | 1099625 | 0.58% | 1641 |
| chr5 | 1376065 | 0.76% | 2243 |
| chr6 | 1172632 | 0.69% | 2022 |
| chr7 | 1460749 | 0.92% | 2373 |
| chr8 | 1122793 | 0.77% | 1907 |
| chr9 | 1428454 | 1.03% | 2212 |
| chr10 | 1513776 | 1.13% | 2560 |
| chr11 | 1598609 | 1.18% | 2697 |
| chr12 | 1222358 | 0.92% | 2025 |
| chr13 | 583664 | 0.51% | 981 |
| chr14 | 786411 | 0.73% | 1320 |
| chr14_GL000225v1_random | 419 | 0.20% | 1 |
| chr15 | 727924 | 0.71% | 1328 |
| chr16 | 1311968 | 1.45% | 2031 |
| chr17 | 1854009 | 2.23% | 2969 |
| chr17_GL000205v2_random | 4572 | 2.46% | 5 |
| chr17_KI270729v1_random | 835 | 0.30% | 2 |
| chr18 | 464230 | 0.58% | 861 |
| chr19 | 1629628 | 2.78% | 2668 |
| chr20 | 1356334 | 2.10% | 2135 |
| chr21 | 374146 | 0.80% | 665 |
| chr22 | 931027 | 1.83% | 1568 |
| chr22_KI270732v1_random | 1783 | 4.29% | 2 |
| chr22_KI270733v1_random | 2842 | 1.58% | 8 |
| chr22_KI270738v1_random | 737 | 0.74% | 1 |
| chrUn_GL000219v1 | 1479 | 0.83% | 2 |
| chrUn_KI270438v1 | 1206 | 1.07% | 3 |
| chrUn_KI270467v1 | 366 | 9.34% | 1 |
| chrUn_KI270749v1 | 316 | 0.20% | 1 |
| chrX | 1070100 | 0.69% | 2581 |
| 3330 contigs with no values (184568177 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 47936 | 175 | 8828 | 594.6 | 437 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF253ZCO.bed.gz | 963.92 KB | 3a3aa096e61843af82c96945af40d00a |
| ENCFF253ZCO.tabix.bed.gz | 480.89 KB | cc1684c457c7419b86d01a6b0c9640fc |
| ENCFF253ZCO.tabix.bed.gz.tbi | 164.48 KB | f57beab34905423418c058a48034bdbc |
| genomic_resource.yaml | 1.99 KB | e2fbd4bc9fc8667748d29ec25e221332 |
| statistics/ |