Histone_ChIP-seq_ENCSR269OVV
Histone_ChIP-seq ENCSR269OVV [biosample_summary="Homo sapiens B cell" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR269OVV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR269OVV [biosamplesummary="Homo sapiens B cell" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF194EUZ|/files/ENCFF194EUZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 2714503 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN127DII|/analyses/ENCAN127DII/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF166EMH|/files/ENCFF166EMH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6801933 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF166EMH|/files/ENCFF166EMH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF166EMH|/files/ENCFF166EMH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR269OVV | float |
Histone_ChIP-seq_ENCSR269OVV |
Histone_ChIP-seq ENCSR269OVV [biosample_summary="Homo sapiens B cell" and target="H3K4me3"]
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[2.11, 41.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF348DYH.bed.gz | 606.28 KB | c00d1bf27d58933340e1ae186848640b |
| ENCFF348DYH.bed.gz.dvc | 100.0 B | b23df897e8202b59d3cf4db2c75699bb |
| ENCFF348DYH.tabix.bed.gz | 317.26 KB | ee8b254fd63c505df8e6cf8e79909027 |
| ENCFF348DYH.tabix.bed.gz.dvc | 106.0 B | 85a209e5161c38ee081d9821ffa16392 |
| ENCFF348DYH.tabix.bed.gz.tbi | 140.16 KB | e96423af8f270ec3addc88ebb9d9c8ef |
| ENCFF348DYH.tabix.bed.gz.tbi.dvc | 110.0 B | 9c9c7d3870f75f97fd818d22a926fa8a |
| genomic_resource.yaml | 3.66 KB | e9dd8e55a2019f9ac34e5afd12b7b8ab |
| genomic_resource_original.yaml | 3.55 KB | d8e7fd3995e7dd52b894738f8eaa306b |
| statistics/ |