Resource
| Id | Histone_ChIP-seq/ENCSR268ZCF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR268ZCF [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN481LFD|/analyses/ENCAN481LFD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF250TIL|/files/ENCFF250TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF250TIL|/files/ENCFF250TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.12. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR268ZCF | float |
Histone_ChIP-seq_ENCSR268ZCF |
Histone_ChIP-seq ENCSR268ZCF [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K27ac"]
|
 |
[1.96, 89.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 113173830 | 3.52% | 64121 |
| chr1 | 11575843 | 4.65% | 6272 |
| chr2 | 8629528 | 3.56% | 4904 |
| chr3 | 7601816 | 3.83% | 4262 |
| chr4 | 4714873 | 2.48% | 2741 |
| chr5 | 5331889 | 2.94% | 3183 |
| chr6 | 5701690 | 3.34% | 3455 |
| chr7 | 5196790 | 3.26% | 3120 |
| chr8 | 4309539 | 2.97% | 2645 |
| chr9 | 5318675 | 3.84% | 2856 |
| chr10 | 6382966 | 4.77% | 3497 |
| chr11 | 5967719 | 4.42% | 3199 |
| chr12 | 5962763 | 4.47% | 3311 |
| chr13 | 2578811 | 2.25% | 1552 |
| chr14 | 3919823 | 3.66% | 2150 |
| chr15 | 4013766 | 3.94% | 2335 |
| chr16 | 3912884 | 4.33% | 2199 |
| chr17 | 6060470 | 7.28% | 3275 |
| chr18 | 1895208 | 2.36% | 1253 |
| chr19 | 4538465 | 7.74% | 2373 |
| chr20 | 3208260 | 4.98% | 1779 |
| chr21 | 1266093 | 2.71% | 802 |
| chr22 | 2741119 | 5.39% | 1449 |
| chrX | 2344840 | 1.50% | 1509 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64121 | 230 | 99450 | 1765 | 1157 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF027RPB.bed.gz | 1.6 MB | b12d49ab871281606a61ce85d17a6334 |
| ENCFF027RPB.tabix.bed.gz | 716.56 KB | 0fec8e69d0c39c458e1829fb3aee08d5 |
| ENCFF027RPB.tabix.bed.gz.tbi | 225.8 KB | 582c1c47278afee3f4339a06bb9c0efd |
| genomic_resource.yaml | 2.76 KB | a632ae9d35db7dfdd7392e9eead98626 |
| statistics/ |