Histone_ChIP-seq_ENCSR268ZCF
Histone_ChIP-seq ENCSR268ZCF [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR268ZCF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR268ZCF [biosamplesummary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN481LFD|/analyses/ENCAN481LFD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF250TIL|/files/ENCFF250TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF250TIL|/files/ENCFF250TIL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR268ZCF | float |
Histone_ChIP-seq_ENCSR268ZCF |
Histone_ChIP-seq ENCSR268ZCF [biosample_summary="Homo sapiens sigmoid colon tissue female adult (53 years)" and target="H3K27ac"]
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[1.96, 89.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF027RPB.bed.gz | 1.6 MB | b12d49ab871281606a61ce85d17a6334 |
| ENCFF027RPB.bed.gz.dvc | 101.0 B | 0c9a4c994d3ee897a2b839d6fab1ec7d |
| ENCFF027RPB.tabix.bed.gz | 716.56 KB | 0fec8e69d0c39c458e1829fb3aee08d5 |
| ENCFF027RPB.tabix.bed.gz.dvc | 106.0 B | f06eef9f44daca60a9995893350471c8 |
| ENCFF027RPB.tabix.bed.gz.tbi | 225.8 KB | 582c1c47278afee3f4339a06bb9c0efd |
| ENCFF027RPB.tabix.bed.gz.tbi.dvc | 110.0 B | df1c12d356069a1ab7086dcf619e4e79 |
| genomic_resource.yaml | 2.76 KB | a632ae9d35db7dfdd7392e9eead98626 |
| genomic_resource_original.yaml | 2.62 KB | ec5652c365403ceeb239f0c1353d5d0c |
| statistics/ |