Resource

Id Histone_ChIP-seq/ENCSR268JQEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR268JQE [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR268JQE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (30 years)
  • date_created: 2015-10-01T07:34:57.296001+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR268JQE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment: Several of the old analyses and files on this dataset have been revoked due to processing with a contaminated control. The new analyses and files submitted in Feb 2023 are the corrected version.
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR268JQE float

Histone_ChIP-seq_ENCSR268JQE
Histone_ChIP-seq ENCSR268JQE [biosample_summary="Homo sapiens ovary tissue female adult (30 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR268JQE [1.5, 40.1]
n
44,455,689
mean
6.14
sd
3.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 444556891.38% 36652
chr1 4396118 1.77% 3426
chr2 3503762 1.45% 2881
chr3 2807873 1.42% 2459
chr4 1643339 0.86% 1478
chr5 1980653 1.09% 1670
chr6 1971236 1.15% 1889
chr7 1939166 1.22% 1653
chr8 1904568 1.31% 1594
chr9 2196570 1.59% 1751
chr10 2511475 1.88% 2066
chr11 2705286 2.00% 2015
chr12 2044439 1.53% 1698
chr13 668616 0.58% 661
chr14 1400317 1.31% 1173
chr15 1487243 1.46% 1241
chr16 1730107 1.92% 1370
chr17 2429408 2.92% 1843
chr18 868273 1.08% 786
chr19 2277144 3.88% 1714
chr20 1194441 1.85% 973
chr21 469943 1.01% 400
chr22 1314259 2.59% 986
chrX 1011453 0.65% 925
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36652 285 21160 1212.91 917
global segment-length histogram

Files

Filename Size md5
ENCFF328KKO.bed.gz 947.12 KB b3083cf28f94b98c6f1b2214b2613cc9
ENCFF328KKO.tabix.bed.gz 410.7 KB 9ba03aaa8c2795ba5d2eb73898780664
ENCFF328KKO.tabix.bed.gz.tbi 161.12 KB 2896b7dde3f811c86c6f127c8d08de72
genomic_resource.yaml 1.9 KB 9474433dd66427f1eb9a2dfc16a1df99
statistics/