Histone_ChIP-seq_ENCSR268JEO
Histone_ChIP-seq ENCSR268JEO [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (36 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR268JEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR268JEO [biosamplesummary="Homo sapiens common myeloid progenitor, CD34-positive male adult (36 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (36 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN611WQG|/analyses/ENCAN611WQG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN611WQG|/analyses/ENCAN611WQG/} has in progress subobject document {6d338fa5-511d-461b-b739-d9c3c4ba092e|/documents/6d338fa5-511d-461b-b739-d9c3c4ba092e/} audit_not_compliant: Processed alignments file {ENCFF207RGU|/files/ENCFF207RGU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11248408 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF207RGU|/files/ENCFF207RGU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF207RGU|/files/ENCFF207RGU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR268JEO | float |
Histone_ChIP-seq_ENCSR268JEO |
Histone_ChIP-seq ENCSR268JEO [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (36 years)" and target="H3K36me3"]
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[1.92, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF936ZZA.bed.gz | 2.43 MB | 583c9eebbdc511daf424fa197202c8f8 |
| ENCFF936ZZA.bed.gz.dvc | 101.0 B | aeefa1402a443fe858f0a28ee6bd37e8 |
| ENCFF936ZZA.tabix.bed.gz | 1.26 MB | 3c9e73f33df35002185dc4fb810ce96d |
| ENCFF936ZZA.tabix.bed.gz.dvc | 107.0 B | aea09e61d97cb6bd664623ac9e54af3b |
| ENCFF936ZZA.tabix.bed.gz.tbi | 207.39 KB | 7ee21a6f67798cd5573f5f7f869fec82 |
| ENCFF936ZZA.tabix.bed.gz.tbi.dvc | 110.0 B | 0df026951629f3aa7cbc20d9e389e5ed |
| genomic_resource.yaml | 3.54 KB | 3c1b4aff9a7e2749db6a3ad6e7213518 |
| genomic_resource_original.yaml | 3.38 KB | de689a78172e35a6fb063b8bcf0fbed7 |
| statistics/ |