Histone_ChIP-seq_ENCSR268BMX
Histone_ChIP-seq ENCSR268BMX [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR268BMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR268BMX [biosamplesummary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN658TGL|/analyses/ENCAN658TGL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF293NKP|/files/ENCFF293NKP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 32342054 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF293NKP|/files/ENCFF293NKP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF293NKP|/files/ENCFF293NKP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR268BMX | float |
Histone_ChIP-seq_ENCSR268BMX |
Histone_ChIP-seq ENCSR268BMX [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K27me3"]
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[1.6, 26] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF751NUT.bed.gz | 1.47 MB | b6b140106deedf3f3389a816e84695f8 |
| ENCFF751NUT.bed.gz.dvc | 101.0 B | 96334e87a63c180995e5319e92029282 |
| ENCFF751NUT.tabix.bed.gz | 777.56 KB | 7d49ebbb36d3f8aa33bf74fbd3fe71b3 |
| ENCFF751NUT.tabix.bed.gz.dvc | 106.0 B | c05bdfd229fbd09b7ee8ba9eab4d8867 |
| ENCFF751NUT.tabix.bed.gz.tbi | 228.05 KB | bf7652b19f9c6501caa625ffebad8a7b |
| ENCFF751NUT.tabix.bed.gz.tbi.dvc | 110.0 B | 0c6b9f463d1ba9ac1ca30477ba493306 |
| genomic_resource.yaml | 3.23 KB | 7df202b28f8c1525669f4f370d3e4214 |
| genomic_resource_original.yaml | 3.09 KB | 23d06141ff716196edd8212b9770fc2f |
| statistics/ |