Histone_ChIP-seq_ENCSR267UCE
Histone_ChIP-seq ENCSR267UCE [biosample_summary="Homo sapiens Loucy" and target="H3F3A"]
×
| Id: | Histone_ChIP-seq/ENCSR267UCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR267UCE [biosamplesummary="Homo sapiens Loucy" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN700WNB|/analyses/ENCAN700WNB/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF154PDL|/files/ENCFF154PDL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 41052231 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF627OZV|/files/ENCFF627OZV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 35335213 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF154PDL|/files/ENCFF154PDL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF154PDL|/files/ENCFF154PDL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.29. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR267UCE | float |
Histone_ChIP-seq_ENCSR267UCE |
Histone_ChIP-seq ENCSR267UCE [biosample_summary="Homo sapiens Loucy" and target="H3F3A"]
|
|
[1.55, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF480UVM.bed.gz | 518.81 KB | 1f0fcdc809730abab3bd14a86c11bc7d |
| ENCFF480UVM.bed.gz.dvc | 100.0 B | 46e983dbfa6026e31a0adb36ea18ac20 |
| ENCFF480UVM.tabix.bed.gz | 237.24 KB | 25d04457675097c3755436bf1b632906 |
| ENCFF480UVM.tabix.bed.gz.dvc | 106.0 B | e81982683f8db612c2bb1609a0b8f0a3 |
| ENCFF480UVM.tabix.bed.gz.tbi | 121.06 KB | 1fc88e74d7d588bbde27fd3a2d5e21e4 |
| ENCFF480UVM.tabix.bed.gz.tbi.dvc | 110.0 B | cd56bdc969791990bb543871478c5dc8 |
| genomic_resource.yaml | 3.63 KB | a2c9befef465b2452e4476ac2b433769 |
| genomic_resource_original.yaml | 3.53 KB | 2b4830aa1851c5995d0effb937a0b746 |
| statistics/ |