Histone_ChIP-seq_ENCSR266EYO
Histone_ChIP-seq ENCSR266EYO [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR266EYO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR266EYO [biosamplesummary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN813BXY|/analyses/ENCAN813BXY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN813BXY|/analyses/ENCAN813BXY/} has in progress subobject document {a1f9c0db-72e3-472e-b1f2-97143daed552|/documents/a1f9c0db-72e3-472e-b1f2-97143daed552/} audit_not_compliant: Processed unfiltered alignments file {ENCFF899FTF|/files/ENCFF899FTF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 25270320 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF340NGG|/files/ENCFF340NGG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 38813455 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF432SKK|/files/ENCFF432SKK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF432SKK|/files/ENCFF432SKK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR266EYO | float |
Histone_ChIP-seq_ENCSR266EYO |
Histone_ChIP-seq ENCSR266EYO [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K9me3"]
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[1.6, 7.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF916LJR.bed.gz | 107.37 KB | 99ffb370421982ba723daeb1c6d03d36 |
| ENCFF916LJR.bed.gz.dvc | 100.0 B | 789d6308e9e3b5aa62fb399ecd966df3 |
| ENCFF916LJR.tabix.bed.gz | 58.84 KB | 05d4b183d3863efe7b96ac07bcce7d04 |
| ENCFF916LJR.tabix.bed.gz.dvc | 105.0 B | 26a472787fac117e67e2115075383ce3 |
| ENCFF916LJR.tabix.bed.gz.tbi | 51.44 KB | eb4a4c77ca9a781ecc4ff3bda7e07ec0 |
| ENCFF916LJR.tabix.bed.gz.tbi.dvc | 109.0 B | 8ad5acfc457f3216618d2fc31d4d8293 |
| genomic_resource.yaml | 3.96 KB | 9a40921d96b70e15ad107996134d18bc |
| genomic_resource_original.yaml | 3.82 KB | 3a0bece0a4aa33737974d6922c4ad37a |
| statistics/ |