Resource

Id Histone_ChIP-seq/ENCSR264APDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR264APD [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR264APD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0012488/
  • biosample_summary: Homo sapiens muscle layer of duodenum tissue male adult (59 years)
  • date_created: 2015-09-15T19:52:37.345203+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR264APD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR264APD float

Histone_ChIP-seq_ENCSR264APD
Histone_ChIP-seq ENCSR264APD [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (59 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR264APD [1.81, 43]
n
42,340,434
mean
13.5
sd
7.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 423404341.32% 36976
chr1 4173319 1.68% 3527
chr1_KI270713v1_random 244 0.60% 1
chr2 2916989 1.20% 2477
chr3 2580429 1.30% 2120
chr4 1926924 1.01% 1610
chr4_GL000008v2_random 1360 0.65% 1
chr5 2157185 1.19% 1778
chr6 2624852 1.54% 2133
chr7 2021074 1.27% 1814
chr8 1599693 1.10% 1441
chr9 1746660 1.26% 1531
chr10 1849143 1.38% 1614
chr11 2245312 1.66% 1889
chr12 2360697 1.77% 1955
chr13 944158 0.83% 828
chr14 1387731 1.30% 1177
chr15 1392714 1.37% 1218
chr16 1445184 1.60% 1326
chr17 2221641 2.67% 2042
chr17_GL000205v2_random 2124 1.14% 2
chr17_KI270729v1_random 805 0.29% 2
chr18 736174 0.92% 675
chr19 2615160 4.46% 2600
chr20 1003606 1.56% 888
chr21 419163 0.90% 405
chr22 802657 1.58% 755
chr22_KI270736v1_random 1613 0.89% 4
chrUn_GL000216v2 414 0.23% 1
chrUn_GL000219v1 2351 1.31% 4
chrUn_KI270442v1 746 0.19% 1
chrX 1115585 0.71% 1120
chrY 44727 0.08% 37
3334 contigs with no values (127430414 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36976 225 10436 1145.08 847
global segment-length histogram

Files

Filename Size md5
ENCFF756CZM.bed.gz 876.21 KB 29d1b4997c08bc5ee82386aa3ad6d5a8
ENCFF756CZM.tabix.bed.gz 401.17 KB b0efda5a86f215804a7bf2d4cb0ff186
ENCFF756CZM.tabix.bed.gz.tbi 181.18 KB 5715106138e8f1fe4cc56e168800f209
genomic_resource.yaml 1.54 KB 6547a03efb931ca7ddb9c3cae6c8c3a7
statistics/