Resource
| Id | Histone_ChIP-seq/ENCSR263WGU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR263WGU [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (25 years) nuclear fraction output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN467DMH|/analyses/ENCAN467DMH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF523PVY|/files/ENCFF523PVY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32687980 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR263WGU | float |
Histone_ChIP-seq_ENCSR263WGU |
Histone_ChIP-seq ENCSR263WGU [biosample_summary="Homo sapiens subcutaneous abdominal adipose tissue tissue nuclear fraction female adult (25 years)" and target="H3K36me3"]
|
 |
[1.81, 22.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 105447580 | 3.28% | 146570 |
| chr1 | 10217888 | 4.10% | 13749 |
| chr2 | 7969977 | 3.29% | 11975 |
| chr3 | 6573535 | 3.32% | 9713 |
| chr4 | 4045641 | 2.13% | 6277 |
| chr5 | 5005483 | 2.76% | 7590 |
| chr6 | 4644795 | 2.72% | 6886 |
| chr7 | 4889792 | 3.07% | 7193 |
| chr8 | 3606181 | 2.48% | 5454 |
| chr9 | 4954788 | 3.58% | 6490 |
| chr10 | 4803788 | 3.59% | 6977 |
| chr11 | 5515291 | 4.08% | 7249 |
| chr12 | 5744141 | 4.31% | 7577 |
| chr13 | 2102898 | 1.84% | 3328 |
| chr14 | 3629281 | 3.39% | 5192 |
| chr15 | 3979610 | 3.90% | 5551 |
| chr16 | 4909642 | 5.43% | 6031 |
| chr17 | 5979532 | 7.18% | 7662 |
| chr18 | 1800997 | 2.24% | 2902 |
| chr19 | 6269518 | 10.70% | 7045 |
| chr20 | 3211269 | 4.98% | 4119 |
| chr21 | 1287431 | 2.76% | 1718 |
| chr22 | 2867531 | 5.64% | 3358 |
| chrX | 1438571 | 0.92% | 2534 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 146570 | 160 | 20096 | 719.43 | 479 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF333PAG.bed.gz | 2.89 MB | da4bf9ef610f9bf72c0a41f3c2734881 |
| ENCFF333PAG.tabix.bed.gz | 1.4 MB | 4ba666c7569e5fd34629f6e4bf230a2f |
| ENCFF333PAG.tabix.bed.gz.tbi | 185.45 KB | 7f82fbb7b4d73b2fc73b82da1ac64696 |
| genomic_resource.yaml | 2.18 KB | 9465318bdef9f4911068b5355cc54969 |
| statistics/ |