| Id: | Histone_ChIP-seq/ENCSR262VXI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR262VXI [biosamplesummary="Homo sapiens mesenchymal stem cell female adult and female adult (59 years), originated from adipose tissue" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (59 years) female adult output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN711WNQ|/analyses/ENCAN711WNQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF071TXV|/files/ENCFF071TXV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24934250 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF097OLC|/files/ENCFF097OLC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23602327 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF097OLC|/files/ENCFF097OLC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF097OLC|/files/ENCFF097OLC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.96. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR262VXI | float |
Histone_ChIP-seq_ENCSR262VXI |
Histone_ChIP-seq ENCSR262VXI [biosample_summary="Homo sapiens mesenchymal stem cell female adult and female adult (59 years), originated from adipose tissue" and target="H3K27me3"]
|
 |
[1.71, 16.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF541LUL.bed.gz | 3.3 MB | 282c9462d6000938fbc38f2f783297fb |
| ENCFF541LUL.bed.gz.dvc | 101.0 B | c39f282c8727db88325d657e8d73d6ca |
| ENCFF541LUL.tabix.bed.gz | 1.62 MB | 5e348a0b4ab82559b103222a705553b1 |
| ENCFF541LUL.tabix.bed.gz.dvc | 107.0 B | 631e7e04e0057b16aa37c9321a817560 |
| ENCFF541LUL.tabix.bed.gz.tbi | 233.57 KB | f7ed3e23b8ee5b501cb78342a0e1ddf0 |
| ENCFF541LUL.tabix.bed.gz.tbi.dvc | 110.0 B | 9341af5e5f5b95cece111e52a01f0da2 |
| genomic_resource.yaml | 4.02 KB | 743f7b83bb90be0b30efc03d99d6163c |
| genomic_resource_original.yaml | 3.83 KB | 4f50880adfb29e0fb8bdb5b5630d485d |
| statistics/ |