Histone_ChIP-seq_ENCSR262NQD
Histone_ChIP-seq ENCSR262NQD [biosample_summary="Homo sapiens HUES48" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR262NQD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR262NQD [biosamplesummary="Homo sapiens HUES48" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN941CWV|/analyses/ENCAN941CWV/} has in progress subobject document {05be471d-c840-481c-bc71-047b0de47cda|/documents/05be471d-c840-481c-bc71-047b0de47cda/} audit_internal_action: Released analysis {ENCAN941CWV|/analyses/ENCAN941CWV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF907NYZ|/files/ENCFF907NYZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18855229 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF774DQE|/files/ENCFF774DQE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21248859 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF907NYZ|/files/ENCFF907NYZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF907NYZ|/files/ENCFF907NYZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR262NQD | float |
Histone_ChIP-seq_ENCSR262NQD |
Histone_ChIP-seq ENCSR262NQD [biosample_summary="Homo sapiens HUES48" and target="H3K27me3"]
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[1.81, 61.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF612HRW.bed.gz | 871.23 KB | 41ef991b8042c7b54d6f61ff6a4486d8 |
| ENCFF612HRW.bed.gz.dvc | 100.0 B | 813325ee06d07903ef49b8974d507973 |
| ENCFF612HRW.tabix.bed.gz | 395.29 KB | dd2b327528ada767a1fa069a51f10951 |
| ENCFF612HRW.tabix.bed.gz.dvc | 106.0 B | 7b95636b07373cab396daeb6f7289db8 |
| ENCFF612HRW.tabix.bed.gz.tbi | 127.14 KB | bb29c934d843c8584de998a417ca6eb0 |
| ENCFF612HRW.tabix.bed.gz.tbi.dvc | 110.0 B | 560e1d343dce784c8038005ed46f95ef |
| genomic_resource.yaml | 3.93 KB | b78ebfa582ba9d8015234bca9fe6671c |
| genomic_resource_original.yaml | 3.82 KB | b42f217e60461ad374da0838883cca7e |
| statistics/ |