Resource

Id Histone_ChIP-seq/ENCSR257BCDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR257BCD [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR257BCD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (34 years)
  • date_created: 2015-10-01T07:17:10.886655+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR257BCD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR257BCD float

Histone_ChIP-seq_ENCSR257BCD
Histone_ChIP-seq ENCSR257BCD [biosample_summary="Homo sapiens stomach tissue male adult (34 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR257BCD [1.96, 16]
n
27,409,865
mean
4.84
sd
1.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 274098650.85% 69552
chr1 2786414 1.12% 6956
chr1_KI270712v1_random 161 0.09% 1
chr2 1993774 0.82% 5264
chr3 1472387 0.74% 3939
chr4 922024 0.48% 2546
chr5 1209291 0.67% 3274
chr6 1290164 0.76% 3627
chr7 1302907 0.82% 3456
chr8 1080223 0.74% 2831
chr9 1395458 1.01% 3359
chr9_KI270718v1_random 541 1.42% 1
chr10 1402355 1.05% 3547
chr11 1648189 1.22% 3987
chr12 1049925 0.79% 2781
chr13 555167 0.49% 1568
chr14 925495 0.86% 2299
chr14_GL000194v1_random 192 0.10% 1
chr15 917415 0.90% 2396
chr16 1287597 1.43% 3011
chr17 1675585 2.01% 3878
chr17_GL000205v2_random 747 0.40% 2
chr18 480076 0.60% 1372
chr19 1501585 2.56% 3247
chr20 893661 1.39% 2223
chr21 343756 0.74% 896
chr22 975090 1.92% 2213
chrUn_GL000195v1 215 0.12% 1
chrUn_KI270442v1 740 0.19% 1
chrX 288713 0.19% 842
chrY 10018 0.02% 33
3336 contigs with no values (127910971 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69552 145 5137 394.09 327
global segment-length histogram

Files

Filename Size md5
ENCFF639JST.bed.gz 1.42 MB fdf2957fe452254947a2c25aec9731b7
ENCFF639JST.tabix.bed.gz 698.73 KB 076c8d84a072407b1795e0c465dc0c48
ENCFF639JST.tabix.bed.gz.tbi 263.47 KB a07ed170b733c6e538f7c3fdbbdfd2b1
genomic_resource.yaml 1.97 KB fdf77134507bc9c0451b1f432a683c4c
statistics/