Resource

Id Histone_ChIP-seq/ENCSR256KTRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR256KTR [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR256KTR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:03:53.430740+00:00
  • date_released: 2016-11-14
  • doi: 10.17989/ENCSR256KTR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR256KTR float

Histone_ChIP-seq_ENCSR256KTR
Histone_ChIP-seq ENCSR256KTR [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR256KTR [1.64, 8]
n
34,046,659
mean
3.36
sd
0.664

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 340466591.06% 45726
chr1 2208990 0.89% 3059
chr1_KI270708v1_random 952 0.75% 2
chr1_KI270709v1_random 22685 33.93% 32
chr1_KI270710v1_random 351 0.87% 1
chr2 1647142 0.68% 2478
chr2_KI270716v1_random 7695 5.00% 4
chr3 1092501 0.55% 1689
chr4 1094665 0.58% 1618
chr4_GL000008v2_random 4574 2.18% 2
chr5 1456052 0.80% 1965
chr5_GL000208v1_random 21267 22.94% 16
chr6 955764 0.56% 1474
chr7 2362416 1.48% 2630
chr8 1618776 1.12% 2069
chr9 950784 0.69% 1403
chr9_KI270719v1_random 12074 6.83% 21
chr9_KI270720v1_random 3487 8.93% 6
chr10 1569084 1.17% 1944
chr11 1767436 1.31% 2118
chr12 1439227 1.08% 1740
chr13 600463 0.53% 916
chr14 1129545 1.06% 1503
chr14_GL000009v2_random 2701 1.34% 6
chr14_GL000194v1_random 2109 1.10% 3
chr14_GL000225v1_random 48426 22.93% 64
chr14_KI270722v1_random 31290 16.12% 13
chr14_KI270723v1_random 4267 11.20% 9
chr14_KI270724v1_random 5067 12.81% 5
chr14_KI270725v1_random 7165 4.15% 10
chr15 1048651 1.03% 1438
chr16 1074315 1.19% 1239
chr17 729152 0.88% 959
chr17_GL000205v2_random 62029 33.42% 22
chr17_KI270729v1_random 98827 35.19% 70
chr17_KI270730v1_random 12293 10.92% 13
chr18 462677 0.58% 720
chr19 2701877 4.61% 2879
chr20 657598 1.02% 925
chr21 1038152 2.22% 1308
chr22 378635 0.75% 541
chr22_KI270732v1_random 12995 31.28% 19
chr22_KI270733v1_random 10225 5.69% 16
chr22_KI270735v1_random 21644 50.56% 31
chr22_KI270736v1_random 12167 6.69% 8
chr22_KI270737v1_random 1591 1.53% 3
chr22_KI270738v1_random 35259 35.48% 31
chr22_KI270739v1_random 477 0.64% 1
chrUn_GL000195v1 310 0.17% 1
chrUn_GL000214v1 896 0.65% 2
chrUn_GL000216v2 64192 36.35% 49
chrUn_GL000218v1 7300 4.53% 16
chrUn_GL000219v1 5844 3.26% 4
chrUn_GL000220v1 1007 0.62% 3
chrUn_GL000224v1 16441 9.15% 17
chrUn_KI270320v1 1004 22.74% 1
chrUn_KI270322v1 365 1.70% 1
chrUn_KI270333v1 2408 89.22% 2
chrUn_KI270336v1 659 64.23% 2
chrUn_KI270337v1 1121 100.00% 1
chrUn_KI270417v1 840 41.12% 1
chrUn_KI270429v1 398 29.24% 1
chrUn_KI270435v1 15397 16.56% 12
chrUn_KI270438v1 43560 38.72% 37
chrUn_KI270442v1 164236 41.89% 133
chrUn_KI270448v1 4991 62.45% 4
chrUn_KI270465v1 409 23.06% 1
chrUn_KI270466v1 1005 81.51% 1
chrUn_KI270467v1 2369 60.43% 2
chrUn_KI270468v1 2567 63.30% 2
chrUn_KI270507v1 4863 90.85% 1
chrUn_KI270508v1 1514 77.60% 2
chrUn_KI270509v1 1674 72.22% 2
chrUn_KI270510v1 1282 53.08% 2
chrUn_KI270511v1 4590 56.48% 2
chrUn_KI270512v1 2534 11.17% 3
chrUn_KI270515v1 4028 63.32% 2
chrUn_KI270516v1 891 68.54% 1
chrUn_KI270517v1 1641 50.45% 1
chrUn_KI270518v1 1857 84.95% 1
chrUn_KI270519v1 45740 33.11% 56
chrUn_KI270521v1 533 6.97% 1
chrUn_KI270522v1 1835 32.34% 1
chrUn_KI270538v1 29472 32.28% 19
chrUn_KI270580v1 896 57.69% 1
chrUn_KI270583v1 1120 80.00% 1
chrUn_KI270584v1 3437 76.16% 3
chrUn_KI270587v1 1752 59.01% 1
chrUn_KI270588v1 4632 75.22% 4
chrUn_KI270589v1 3542 7.96% 3
chrUn_KI270590v1 3673 78.40% 4
chrUn_KI270591v1 4754 82.02% 3
chrUn_KI270593v1 1190 39.13% 2
chrUn_KI270742v1 2911 1.56% 7
chrUn_KI270744v1 5240 3.11% 7
chrUn_KI270746v1 18783 28.25% 24
chrUn_KI270747v1 938 0.47% 1
chrUn_KI270749v1 3976 2.50% 7
chrUn_KI270750v1 29188 19.61% 10
chrUn_KI270751v1 23246 15.42% 29
chrUn_KI270754v1 1119 2.78% 2
chrUn_KI270756v1 6109 7.68% 6
chrUn_KI270757v1 17350 24.35% 19
chrX 5000124 3.20% 8125
chrY 47387 0.08% 57
3262 contigs with no values (122346334 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45726 200 22621 744.58 580
global segment-length histogram

Files

Filename Size md5
ENCFF719LDJ.bed.gz 885.22 KB c320f84e9611173ab559a98be1a9fdf1
ENCFF719LDJ.tabix.bed.gz 453.82 KB 61108506d279408401486db433c81c8c
ENCFF719LDJ.tabix.bed.gz.tbi 180.38 KB 6c96ecd0764502c94cea1e4b2d9df324
genomic_resource.yaml 2.0 KB cd8efa232e8396b04b62838cf66b937b
statistics/