Resource
| Id | Histone_ChIP-seq/ENCSR256ESY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR256ESY [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN529BSD|/analyses/ENCAN529BSD/} has in progress subobject document {22686369-c02b-460d-aa3f-662f76e095cd|/documents/22686369-c02b-460d-aa3f-662f76e095cd/} audit_internal_action: Released analysis {ENCAN529BSD|/analyses/ENCAN529BSD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF870AGH|/files/ENCFF870AGH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 32121673 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR256ESY | float |
Histone_ChIP-seq_ENCSR256ESY |
Histone_ChIP-seq ENCSR256ESY [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H3K36me3"]
|
 |
[1.59, 13.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51045768 | 1.59% | 143755 |
| chr1 | 4977078 | 2.00% | 14057 |
| chr2 | 3242818 | 1.34% | 10157 |
| chr3 | 2795995 | 1.41% | 8159 |
| chr4 | 1673062 | 0.88% | 5364 |
| chr5 | 2233722 | 1.23% | 6817 |
| chr6 | 1966860 | 1.15% | 5946 |
| chr7 | 2579049 | 1.62% | 7421 |
| chr8 | 1535197 | 1.06% | 4754 |
| chr9 | 2369825 | 1.71% | 6615 |
| chr10 | 1818757 | 1.36% | 5700 |
| chr11 | 2708052 | 2.00% | 7442 |
| chr12 | 2861011 | 2.15% | 7742 |
| chr13 | 884480 | 0.77% | 2979 |
| chr14 | 1589883 | 1.49% | 4801 |
| chr15 | 1619735 | 1.59% | 4808 |
| chr16 | 2649854 | 2.93% | 6793 |
| chr17 | 3361003 | 4.04% | 8801 |
| chr18 | 769013 | 0.96% | 2573 |
| chr19 | 4521091 | 7.71% | 10035 |
| chr20 | 1716677 | 2.66% | 4541 |
| chr21 | 629268 | 1.35% | 1804 |
| chr22 | 1846821 | 3.63% | 4553 |
| chrX | 673636 | 0.43% | 1822 |
| chrY | 22881 | 0.04% | 71 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 143755 | 130 | 16373 | 355.09 | 261 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF239LQO.bed.gz | 2.87 MB | aa588b680c3495907e52691218fcd371 |
| ENCFF239LQO.tabix.bed.gz | 1.39 MB | 5e657e4681840d87e9747cae21a9a67b |
| ENCFF239LQO.tabix.bed.gz.tbi | 222.71 KB | 47742934d43c23d1d50ec2245dd11983 |
| genomic_resource.yaml | 2.2 KB | deb09629d1923f782ead7499e11f45a7 |
| statistics/ |