Histone_ChIP-seq_ENCSR254XTB
Histone_ChIP-seq ENCSR254XTB [biosample_summary="Homo sapiens neutrophil male" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR254XTB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR254XTB [biosamplesummary="Homo sapiens neutrophil male" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN750TKR|/analyses/ENCAN750TKR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF073HXA|/files/ENCFF073HXA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8013838 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF073HXA|/files/ENCFF073HXA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF073HXA|/files/ENCFF073HXA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.66. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR254XTB | float |
Histone_ChIP-seq_ENCSR254XTB |
Histone_ChIP-seq ENCSR254XTB [biosample_summary="Homo sapiens neutrophil male" and target="H3K27me3"]
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[2.21, 23.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF073FHE.bed.gz | 1.33 MB | 3c2fcf5bad35e88d9fc3c621a6b41f95 |
| ENCFF073FHE.bed.gz.dvc | 101.0 B | 31e0b4affe2cd02e3ad30a23be1a8435 |
| ENCFF073FHE.tabix.bed.gz | 700.04 KB | bf0c9f5af26750f90c20d762a1674d13 |
| ENCFF073FHE.tabix.bed.gz.dvc | 106.0 B | 55cd73d48c4be6cafd25de688325a65c |
| ENCFF073FHE.tabix.bed.gz.tbi | 193.09 KB | 5632f05732f77b1481cae254826c4e98 |
| ENCFF073FHE.tabix.bed.gz.tbi.dvc | 110.0 B | 4f0c066a9e875aa796a0afcf1c9094f3 |
| genomic_resource.yaml | 3.13 KB | aa12e0d085ef697fa630d2eb301eafce |
| genomic_resource_original.yaml | 3.02 KB | 4e8b9c5dc0a83944206ae8907fa13427 |
| statistics/ |