Histone_ChIP-seq_ENCSR253WND
Histone_ChIP-seq ENCSR253WND [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR253WND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR253WND [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN749BLM|/analyses/ENCAN749BLM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF370TUZ|/files/ENCFF370TUZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 38431113 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF370TUZ|/files/ENCFF370TUZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF370TUZ|/files/ENCFF370TUZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR253WND | float |
Histone_ChIP-seq_ENCSR253WND |
Histone_ChIP-seq ENCSR253WND [biosample_summary="Homo sapiens heart right ventricle tissue male adult (55 years)" and target="H3K4me1"]
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[1.78, 20.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF008WTY.bed.gz | 3.48 MB | eccb354f741e1efbcb78d35c782ad87b |
| ENCFF008WTY.bed.gz.dvc | 101.0 B | 01c341732668838f0677fd0b9fbe815e |
| ENCFF008WTY.tabix.bed.gz | 1.59 MB | e4b8acdf38348182e684d9821e222256 |
| ENCFF008WTY.tabix.bed.gz.dvc | 107.0 B | af224a2a7a08236029dbca757fe3ccde |
| ENCFF008WTY.tabix.bed.gz.tbi | 328.55 KB | fd41f1d41f9ecb0ed3d68fc014081ac8 |
| ENCFF008WTY.tabix.bed.gz.tbi.dvc | 110.0 B | d53dcd5091897d534035e7a24041f5b2 |
| genomic_resource.yaml | 3.28 KB | d838c6bd55d7513e1075b462bc721818 |
| genomic_resource_original.yaml | 3.13 KB | 13fedbd65921601add24c9ac641481fd |
| statistics/ |