Resource

Id Histone_ChIP-seq/ENCSR253WMNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR253WMN [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR253WMN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003346/
  • biosample_summary: Homo sapiens mucosa of rectum tissue female adult (50 years)
  • date_created: 2016-03-03T20:36:43.202397+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR253WMN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (50 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR253WMN float

Histone_ChIP-seq_ENCSR253WMN
Histone_ChIP-seq ENCSR253WMN [biosample_summary="Homo sapiens mucosa of rectum tissue female adult (50 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR253WMN [1.81, 13.2]
n
7,763,385
mean
4.88
sd
1.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77633850.24% 21823
chr1 371026 0.15% 1098
chr1_KI270709v1_random 279 0.42% 1
chr2 394490 0.16% 1197
chr2_KI270716v1_random 206 0.13% 1
chr3 296791 0.15% 919
chr4 396122 0.21% 1185
chr4_GL000008v2_random 4182 1.99% 3
chr5 530123 0.29% 1537
chr6 269362 0.16% 851
chr7 439833 0.28% 1350
chr8 337043 0.23% 1072
chr9 217725 0.16% 620
chr9_KI270718v1_random 202 0.53% 1
chr9_KI270720v1_random 837 2.14% 2
chr10 338963 0.25% 1024
chr11 234926 0.17% 761
chr12 376445 0.28% 999
chr13 237441 0.21% 798
chr14 214882 0.20% 719
chr14_GL000225v1_random 3593 1.70% 12
chr14_KI270722v1_random 1081 0.56% 4
chr15 255353 0.25% 685
chr16 243626 0.27% 682
chr17 150278 0.18% 427
chr17_GL000205v2_random 3012 1.62% 7
chr17_KI270729v1_random 20469 7.29% 45
chr17_KI270730v1_random 5096 4.53% 13
chr18 164901 0.21% 544
chr19 1515053 2.58% 3039
chr20 133911 0.21% 388
chr21 158057 0.34% 502
chr22 57685 0.11% 162
chr22_KI270732v1_random 245 0.59% 1
chr22_KI270733v1_random 488 0.27% 2
chr22_KI270735v1_random 899 2.10% 2
chr22_KI270736v1_random 14539 7.99% 25
chr22_KI270738v1_random 1070 1.08% 4
chrUn_GL000214v1 482 0.35% 2
chrUn_GL000216v2 11409 6.46% 28
chrUn_GL000219v1 4808 2.68% 9
chrUn_GL000224v1 4127 2.30% 11
chrUn_KI270435v1 326 0.35% 1
chrUn_KI270438v1 18840 16.75% 40
chrUn_KI270442v1 23419 5.97% 60
chrUn_KI270468v1 163 4.02% 1
chrUn_KI270507v1 242 4.52% 1
chrUn_KI270512v1 532 2.34% 2
chrUn_KI270515v1 379 5.96% 1
chrUn_KI270519v1 1450 1.05% 3
chrUn_KI270538v1 794 0.87% 4
chrUn_KI270587v1 1311 44.16% 2
chrUn_KI270589v1 1321 2.97% 4
chrUn_KI270744v1 1436 0.85% 4
chrUn_KI270746v1 1791 2.69% 5
chrUn_KI270750v1 1262 0.85% 3
chrUn_KI270751v1 1022 0.68% 1
chrUn_KI270754v1 232 0.58% 1
chrUn_KI270756v1 1330 1.67% 4
chrUn_KI270757v1 1828 2.57% 5
chrX 281312 0.18% 920
chrY 13335 0.02% 29
3305 contigs with no values (124728304 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 21823 135 8877 355.74 286
global segment-length histogram

Files

Filename Size md5
ENCFF117WRN.bed.gz 393.74 KB 9622a08de7b90c6cd6fd3313e0c3ef9a
ENCFF117WRN.tabix.bed.gz 207.3 KB fe4fb6c9fadbb620d480c1da72560026
ENCFF117WRN.tabix.bed.gz.tbi 121.71 KB d34b30e6cf7910ad41e2a068b0970a9a
genomic_resource.yaml 2.01 KB 35dd9bdbb653c3cdbc0e0c13263a317a
statistics/